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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0569300-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:23427730:23428732:1 gene:Os12g0569300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thaumatin, pathogenesis-related family protein. (Os12t0569300-01)
Sequence

ATGGCCAAGCAGCTCGCCCTCGTTCTCCTCGTCGCCGTCGTGGCGGCGGCGGCGACGTCG
GTGGCCGCCGCCACCAAGCTGACGCTCCACAACCTGTGCCCGTACCCGGTGTGGCCGCTG
GTGACGCCCAACACCGGCTTCCCTTCCATCTCCGGCAACACCGCGCGGCTCGACGGCGGC
GGGCGCGGGCTCGTGTCGTACGACTTCCCGGCGAGCTTCTGGGCGGGGCGCGTCGTGGCG
CGCACCGGGTGCGGCGGCGGCGGCGGACTGGTGCGGTGCGAGACCGGGAACGCGCCGCCG
GCGACGGTGGTGCAGCTGGTGGTGCACTCGCCGGAGGGGGCACAAGACCTGGCCGCGTAC
AGCGTGAGCTTGGTGGATGGGTTCAACGTCCCGGCGGTGGTGAGCCCGCAGGCCATCGCC
GGCGGCGGGCAGTGCCCGGCGCTGGGGTGCGCGGCCGACCTGAACGCCGGGTGCCCGCGG
TCGCAGCGCGTCGTCGGCGCCGGCGGCGCCGTCGTGGCGTGCCGGGGCACGGCGGACTAC
TTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAG
CACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCC
GCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAG

Peptide Sequence

PEP ID

Os12t0569300-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:23427730:23428732:1 gene:Os12g0569300 transcript:Os12t0569300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thaumatin, pathogenesis-related family protein. (Os12t0569300-01)
Sequence

MAKQLALVLLVAVVAAAATSVAAATKLTLHNLCPYPVWPLVTPNTGFPSISGNTARLDGG
GRGLVSYDFPASFWAGRVVARTGCGGGGGLVRCETGNAPPATVVQLVVHSPEGAQDLAAY
SVSLVDGFNVPAVVSPQAIAGGGQCPALGCAADLNAGCPRSQRVVGAGGAVVACRGTADY
FKARCPLTRTTGSDVEPVPQHCLAPGELKVVFCQPSMVAAAVPELIRTVVANI

Transcript Sequence

Transcript ID

Os12t0569300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23427730:23428732:1 gene:Os12g0569300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thaumatin, pathogenesis-related family protein. (Os12t0569300-01)
Sequence

ACACCCCCATCCTCACCAACTCACTCCCTTGAAAAGCTAGACACACACACATGGCCAAGC
AGCTCGCCCTCGTTCTCCTCGTCGCCGTCGTGGCGGCGGCGGCGACGTCGGTGGCCGCCG
CCACCAAGCTGACGCTCCACAACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCA
ACACCGGCTTCCCTTCCATCTCCGGCAACACCGCGCGGCTCGACGGCGGCGGGCGCGGGC
TCGTGTCGTACGACTTCCCGGCGAGCTTCTGGGCGGGGCGCGTCGTGGCGCGCACCGGGT
GCGGCGGCGGCGGCGGACTGGTGCGGTGCGAGACCGGGAACGCGCCGCCGGCGACGGTGG
TGCAGCTGGTGGTGCACTCGCCGGAGGGGGCACAAGACCTGGCCGCGTACAGCGTGAGCT
TGGTGGATGGGTTCAACGTCCCGGCGGTGGTGAGCCCGCAGGCCATCGCCGGCGGCGGGC
AGTGCCCGGCGCTGGGGTGCGCGGCCGACCTGAACGCCGGGTGCCCGCGGTCGCAGCGCG
TCGTCGGCGCCGGCGGCGCCGTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGC
GGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCG
CCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGG
AGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACAC
GTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTAGCTGTGTGTAGAAGTGGGTAGGGGG
GAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTAC
GGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGACGTATTTTGTTTTT
TATGTAAGAAAAAAAAATGCTTTGATGTGTTTTTATTGCCACG