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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0568900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:23410052:23411077:1 gene:Os12g0568900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thaumatin, pathogenesis-related family protein. (Os12t0568900-01)
Sequence

ATGGCCAGCGCCCTCGCCTTCGTCGCCGTCCTCCTCGCCGCCGCCGCCGCGGCGACCTCG
CCGGCGGCGGTGGCGGCCACCACGCTGACCATCCAGAACCTGTGCCCGCACCCGGTGTGG
CCGCTCGTCACCCCCACCTCCGGCCAACCCATCTCCGACAACACCGCGCGCCTCGACCCC
AACTCCCTCATCTCCCTCGCCTTCCCGCCCACGCCGTGGTCCGGCCGCGTCGCCGCGCGC
ACCGGCTGCGACGCGGCGGCGTCGCCGCCGGCCGGGTGCGAGACCGGCGCCTCGCCGCCG
TCCACCGTGGCGCAGCTGAGCGTCCACGGCGGCGGCGACGTCGCGACGTACAGCGTCAGC
CTCGTGGACGGCTTCAACGTGCCCGTGGTCGTCAGCCCGCAGGCCGTCGGCGGCGGCCAG
TGCCCCGCCCTCGGCTGCGTCGTCGACCTCAACTGCGACTGCCCGCTGGGGCAGCGGTTC
TCCGACGGCGCCGCCTGCCGCGGCCCGCCGGAGTACTTCAAGGGCCGGTGCCCGCAGACG
AGGACGACGCCGGGCGACGTCGAGCCCGTGCCGCAGAGCTGCCGCTCCCCCGGCGAGCTC
AAGGTCATCTTCTGCCCGCCCACCATGCTCACCGCCGCCGCCGCCGCCGCCGCCAGCGAC
ATGCTCATCCGTACCGTCGTCGCCTCCAGCTAG

Peptide Sequence

PEP ID

Os12t0568900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:23410052:23411077:1 gene:Os12g0568900 transcript:Os12t0568900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thaumatin, pathogenesis-related family protein. (Os12t0568900-01)
Sequence

MASALAFVAVLLAAAAAATSPAAVAATTLTIQNLCPHPVWPLVTPTSGQPISDNTARLDP
NSLISLAFPPTPWSGRVAARTGCDAAASPPAGCETGASPPSTVAQLSVHGGGDVATYSVS
LVDGFNVPVVVSPQAVGGGQCPALGCVVDLNCDCPLGQRFSDGAACRGPPEYFKGRCPQT
RTTPGDVEPVPQSCRSPGELKVIFCPPTMLTAAAAAAASDMLIRTVVASS

Transcript Sequence

Transcript ID

Os12t0568900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23410052:23411077:1 gene:Os12g0568900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thaumatin, pathogenesis-related family protein. (Os12t0568900-01)
Sequence

ACACACTCCAAGCAAGAACTCAGCTTAGCTAGCTAGCAATGGCCAGCGCCCTCGCCTTCG
TCGCCGTCCTCCTCGCCGCCGCCGCCGCGGCGACCTCGCCGGCGGCGGTGGCGGCCACCA
CGCTGACCATCCAGAACCTGTGCCCGCACCCGGTGTGGCCGCTCGTCACCCCCACCTCCG
GCCAACCCATCTCCGACAACACCGCGCGCCTCGACCCCAACTCCCTCATCTCCCTCGCCT
TCCCGCCCACGCCGTGGTCCGGCCGCGTCGCCGCGCGCACCGGCTGCGACGCGGCGGCGT
CGCCGCCGGCCGGGTGCGAGACCGGCGCCTCGCCGCCGTCCACCGTGGCGCAGCTGAGCG
TCCACGGCGGCGGCGACGTCGCGACGTACAGCGTCAGCCTCGTGGACGGCTTCAACGTGC
CCGTGGTCGTCAGCCCGCAGGCCGTCGGCGGCGGCCAGTGCCCCGCCCTCGGCTGCGTCG
TCGACCTCAACTGCGACTGCCCGCTGGGGCAGCGGTTCTCCGACGGCGCCGCCTGCCGCG
GCCCGCCGGAGTACTTCAAGGGCCGGTGCCCGCAGACGAGGACGACGCCGGGCGACGTCG
AGCCCGTGCCGCAGAGCTGCCGCTCCCCCGGCGAGCTCAAGGTCATCTTCTGCCCGCCCA
CCATGCTCACCGCCGCCGCCGCCGCCGCCGCCAGCGACATGCTCATCCGTACCGTCGTCG
CCTCCAGCTAGATCGCTCGCTTCGCCGGCGAGACGACGGCGAGAAGAGAAATCCCGTGCC
TAATGCTGACGCATGCATGGGCTTAATAATAAATTAATTAATCAATTAAGCTGTGGCTTT
GAGCATGTTAATTACTACTTAATTAATCTTAATTAGCATCGATCTGTGGCTGTGGAGATG
TAATTAGCTCGAGCTTTGGCTTGGAGCATACTTGGTGTTCGTCTGTGTTGTTTTTCGATG
TGCTACGCCATTAGCAATGGCTAGCAAAAAATAATCAATCAGTATGAAATTTCTCGTGTT
GTGATG