Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0568100-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:23376363:23378129:-1 gene:Os12g0568100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Zinc knuckle family protein, expressed. (Os12t0568100-01)
Sequence

TGCCCAGGAAGCACGCGATGCTACAACTGCTGGTACTCAGGGCACATCGCTAGGAATTGC
CCTACCTCCCGTGCGGCTAGGGCGCAGCCGGCCACTGGTTCAAAAGAAGTGGCAACGAAG
CCAGCGGGAGGTGAAAAACCGCGGAAAGAAGTGCTAGAAGCTTTGCCTCCCAGAAAGAAG
GGGCGAGAAGAGGGAGTGGCTGCTGGTGATGGCATGGCTAGCTTTCAGATCTGCGCTCAG
CAGCCCTCTCGGGTCATGAAGGAGTGGCGGACCGGGGACGCCAACATCCGGCCGGAGTCG
GGGCGGTGCACCATCTCCTGGACGCCGCGCATGGTGGAGACGGAGGCCATCTTCGAGCAG
AAGGTGCTCCTGGCCACAGTGCTTGGCAACCAGCCAGCGCTCTCACCTAGAGATCTGGTT
GCGGTGATCGTCGACTGTGGCATCCTCCCCGCGCACTTCCGGGTGGAGGTAACGACCCCT
GAGGACTACCTAATTGTGTTTCGTTCTGCCAGAGAAAAGGATTGGGTCCTCGGCAAATCC
AAACAAGTCTTCTTCCAAGGGGCGCCAATCGCCTTCAAGAGCTGGAACAGGCGCCTGCTG
GCCAGCAGCACGAGGTTCCAATTCTTCACCAAGCTGTCATTAGAAGGGCTTCCCCAGCAC
GCCTGGGATGAGGAGGCGATGGCCCAGCTGATCCGTGAGCTGGGTGGAGAGTTGGTGGAG
CTTGTTCCGCCGGCGGACGCGAGGGTTCTCACCATGTTCGCCTGGCTCAAGAACCCGTCT
GCGGTGCCAACAACGCTGGAGGTGGAGATCCCAGAGCGCGCGGGGGGCGGCCCGCCGTGC
TGGGAACGTATGGCGGGATCAATCAGGATTCCAAGGGCGCCTCTGCACAAGTGCACGCTG
ACGTACAATATCATTGTGCACATTGAGGAGATCATTGACCCGACGCCCCTCCATGTTCCC
CTCTCCACGGCCTCCAACGACGAAGATGATGATGACGTCCCGCGCCAGGTTACGTTCTCC
TGCTGGGCTGGCCGAATCGACGGCACAGGGCCGTGGACGTCGAAACAAGGCGGAGGTCGG
CCTTTTGGCGGAGCATCTGGCTTTGCTGGTGGGCTACCGGGGCGCACCTGGTCGACATCT
TCAGTTCAGCGGGTGTCCGAGATGATCCCTACCAACCCCGGCGCGCTGAGGGATACCGCC
CGCGACGACGAGCACACTGAACACGCCGGCTCGGGCCTGCATGCTTCGGACAGGGATACG
ATAGAGGAACACTCAAGTGGCGAGCCTGGGAATAGGATGGCGGGGAGGGGAGATGATGCT
GCGTGTAATGTCGTGCCGCGTGTGCTTGCCACGAGCACGGCGCTGGTGGCGGGGAGAGAC
GTTCTGGCGACGGGGAAAGATGTGCTGGCGACGGAGAATGGCGTTCTGGCGACGGGGAAG
GATGTGCTGGCAACAGGGGGCGAGGTTGCTCTGGTCGCGAGAAGTGATGCTTAG

Peptide Sequence

PEP ID

Os12t0568100-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:23376363:23378129:-1 gene:Os12g0568100 transcript:Os12t0568100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Zinc knuckle family protein, expressed. (Os12t0568100-01)
Sequence

CPGSTRCYNCWYSGHIARNCPTSRAARAQPATGSKEVATKPAGGEKPRKEVLEALPPRKK
GREEGVAAGDGMASFQICAQQPSRVMKEWRTGDANIRPESGRCTISWTPRMVETEAIFEQ
KVLLATVLGNQPALSPRDLVAVIVDCGILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKS
KQVFFQGAPIAFKSWNRRLLASSTRFQFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVE
LVPPADARVLTMFAWLKNPSAVPTTLEVEIPERAGGGPPCWERMAGSIRIPRAPLHKCTL
TYNIIVHIEEIIDPTPLHVPLSTASNDEDDDDVPRQVTFSCWAGRIDGTGPWTSKQGGGR
PFGGASGFAGGLPGRTWSTSSVQRVSEMIPTNPGALRDTARDDEHTEHAGSGLHASDRDT
IEEHSSGEPGNRMAGRGDDAACNVVPRVLATSTALVAGRDVLATGKDVLATENGVLATGK
DVLATGGEVALVARSDA

Transcript Sequence

Transcript ID

Os12t0568100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23376363:23378129:-1 gene:Os12g0568100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Zinc knuckle family protein, expressed. (Os12t0568100-01)
Sequence

CTGCCCAGGAAGCACGCGATGCTACAACTGCTGGTACTCAGGGCACATCGCTAGGAATTG
CCCTACCTCCCGTGCGGCTAGGGCGCAGCCGGCCACTGGTTCAAAAGAAGTGGCAACGAA
GCCAGCGGGAGGTGAAAAACCGCGGAAAGAAGTGCTAGAAGCTTTGCCTCCCAGAAAGAA
GGGGCGAGAAGAGGGAGTGGCTGCTGGTGATGGCATGGCTAGCTTTCAGATCTGCGCTCA
GCAGCCCTCTCGGGTCATGAAGGAGTGGCGGACCGGGGACGCCAACATCCGGCCGGAGTC
GGGGCGGTGCACCATCTCCTGGACGCCGCGCATGGTGGAGACGGAGGCCATCTTCGAGCA
GAAGGTGCTCCTGGCCACAGTGCTTGGCAACCAGCCAGCGCTCTCACCTAGAGATCTGGT
TGCGGTGATCGTCGACTGTGGCATCCTCCCCGCGCACTTCCGGGTGGAGGTAACGACCCC
TGAGGACTACCTAATTGTGTTTCGTTCTGCCAGAGAAAAGGATTGGGTCCTCGGCAAATC
CAAACAAGTCTTCTTCCAAGGGGCGCCAATCGCCTTCAAGAGCTGGAACAGGCGCCTGCT
GGCCAGCAGCACGAGGTTCCAATTCTTCACCAAGCTGTCATTAGAAGGGCTTCCCCAGCA
CGCCTGGGATGAGGAGGCGATGGCCCAGCTGATCCGTGAGCTGGGTGGAGAGTTGGTGGA
GCTTGTTCCGCCGGCGGACGCGAGGGTTCTCACCATGTTCGCCTGGCTCAAGAACCCGTC
TGCGGTGCCAACAACGCTGGAGGTGGAGATCCCAGAGCGCGCGGGGGGCGGCCCGCCGTG
CTGGGAACGTATGGCGGGATCAATCAGGATTCCAAGGGCGCCTCTGCACAAGTGCACGCT
GACGTACAATATCATTGTGCACATTGAGGAGATCATTGACCCGACGCCCCTCCATGTTCC
CCTCTCCACGGCCTCCAACGACGAAGATGATGATGACGTCCCGCGCCAGGTTACGTTCTC
CTGCTGGGCTGGCCGAATCGACGGCACAGGGCCGTGGACGTCGAAACAAGGCGGAGGTCG
GCCTTTTGGCGGAGCATCTGGCTTTGCTGGTGGGCTACCGGGGCGCACCTGGTCGACATC
TTCAGTTCAGCGGGTGTCCGAGATGATCCCTACCAACCCCGGCGCGCTGAGGGATACCGC
CCGCGACGACGAGCACACTGAACACGCCGGCTCGGGCCTGCATGCTTCGGACAGGGATAC
GATAGAGGAACACTCAAGTGGCGAGCCTGGGAATAGGATGGCGGGGAGGGGAGATGATGC
TGCGTGTAATGTCGTGCCGCGTGTGCTTGCCACGAGCACGGCGCTGGTGGCGGGGAGAGA
CGTTCTGGCGACGGGGAAAGATGTGCTGGCGACGGAGAATGGCGTTCTGGCGACGGGGAA
GGATGTGCTGGCAACAGGGGGCGAGGTTGCTCTGGTCGCGAGAAGTGATGCTTAGCGGTT
GGGAAGTGAGGTTCAGGCGACAGGACGATCCGAAGAGGGTAGCAAGGTAACTGCAATGCC
TTCGTCGAAGATCTGGTTCTCACCACAATTGCAGCCAAAGAGCTGTGCAGCGCCATCCCT
TGCAGTCTCCTGCGATGTCGTCGTTCTGGATGAGATGCAGCGAAGCCCATCAGCTGATCA
GTTCACACAGATCATGTAGCGCCCGTTCCGTCGTGGCGCCTAGCGGGAAAATTATCTCTC
AAAAACCCTAATTGCGAAATTTGTTCC