Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0564400-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:23148319:23157116:1 gene:Os12g0564400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Oxygen-evolving complex protein PsbP description:Similar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor. (Os12t0564400-01);Similar to PsbP. (Os12t0564400-02)
Sequence

TCGCTGCTGCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCG
CCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTG
TGCCACCCACACCGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTC
TTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATC
GACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCT
GGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATA
TCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCT
GCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGA
CGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTAT
GAAGTTGAGGTGAACCAAACAGATTATACAAATTCCCATTCATAA

Peptide Sequence

PEP ID

Os12t0564400-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:23148319:23157116:1 gene:Os12g0564400 transcript:Os12t0564400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Oxygen-evolving complex protein PsbP description:Similar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor. (Os12t0564400-01);Similar to PsbP. (Os12t0564400-02)
Sequence

SLLLHCSGHGHRRRHGRRTAPSLPPRAARRFPAREALLPLCHPHRRNVLSTMLSTSTVFL
FGPKQITLAETTGGTFREYIDTFDGYSFLYPKSWIQVRGAGADIFFRDPFFLDENMSVEI
SSPSSSKYMTVEDLGPPEKAAERVLQQYLTEFMSTRLGVRRTSNILSASSKVADDGKLYY
EVEVNQTDYTNSHS

Transcript Sequence

Transcript ID

Os12t0564400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23148319:23157116:1 gene:Os12g0564400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Oxygen-evolving complex protein PsbP description:Similar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor. (Os12t0564400-01);Similar to PsbP. (Os12t0564400-02)
Sequence

ATCGCTGCTGCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGC
GCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCT
GTGCCACCCACACCGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCT
CTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACAT
CGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGC
TGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGAT
ATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGC
TGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCG
ACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTA
TGAAGTTGAGGTGAACCAAACAGATTATACAAATTCCCATTCATAACTCACATAATCAGC
CTGCAAAGTTCAGTTTGTTTCTCCCACTGTTTGTTCAGAGATGCTTGAAAAAAAAAACCT
GCATGAACATTCAGACAAATTGCTTCTGCTGCTGCTGCTGCTGTTTTTGCAGGTGAATAT
CAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCT
GGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCT
CCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCAT
GGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAG
TTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCAC
CCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATA
TATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAAGATCCAAAACTTGC