Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0563700-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:23118859:23122699:-1 gene:Os12g0563700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 35 description:Pectin lyase fold domain containing protein. (Os12t0563700-01)
Sequence	ATGGAGATTATTAGTCCTAGTAGTAGCAGCAATAACAATTCACCTGTTCTTGCAACATTT CTTGTGGTTCTTGTAGTGCTCCTAGCATCATCACGGCCAGCCTCGTCGCAGAACCAGCAA TCCTTCACCATCAACCCCGGCGGCGCCGCGGCGGCGAGGCCCGGCGGCGGTAAAGGCGGC GGCGGCGGCGGCGGGCCGGGCAGCTTCAGCGACTTCCTGACCCAGAACGTGCAGCACTAC GTGCTGAGCGAGCAGAAGTACGCCGGGAAGGTGAAGGCGCTGGACGCGGAGCTGTCGGCA GCGGAGGCCGGCGCGGCGAGGTACGTGGTGAGCGGCGACGGGAAGGGGAAGTTCAGGACC ATCACCGAGGCCATCAAGGCCGTGCCGGAGTACAACAAGAAGAGGGTCATCCTCGACATC AGGCCCGGCACCTACAAGGAGAAGCTGTTGATCCCGTTCACGAAGCCGTTCATCACGTTC GTGGGGAACCCGAGGAGCCCGCCGACGATCATGTGGGACGACAGGGCGGCGACGCACGGC AAGGACGGCCAGCCCATGGGCACCATGCTCTCCGCCACCGTCGCCGTCGAGGCCGACTAC TTCATGGCCTCCAGCATCATCTTCAAGAACAACGCGCCGATGGCGGCGCCGGGAGCGCAT GGAGGGCAGGCGGTGGCGCTGCGGGTGTTCGGGAGCAAGGTGGCGATGTACAACTGCACC ATCGACGGCGGGCAGGACACGCTGTACGACCACAAGGGCCTCCATTACTTCAAGAACTGC CTCATCCGTGGCAGCGTCGACTTCATCTTCGGCTTCGGCAGGTCCCTCTACGCGGATTGC ACGATTGAGTCGGTGACGAAGGAGGTGGCGGTGGTGACGGCGCAGCAGAGGAGCAAGAAC ATTGCCGAGGCCATCGACACCGGGTTCTCCTTCCTGCGCTGCAAGATCAGCGGCATTGGG CAGATCTACCTGGGGCGGGCATGGGGTGACTCGTCCCGGGTGGTTTACTCCTACACCACC ATGGGCAAGGAGGTTGTGCCGATCGGTTGGGACGGCTGGGAAGTCCAGAAACCCGAGCAT AGCGGGATATACTACGGAGAGTACAAGTGCAGTGGGCCCGGGGCGCTGCCTAGCAAGAGG ATCGGGTGGTCGCTGGTGCTGAGCGACATCCAGGCCAAGCCCTTCACCGGATCACACTTC GTCTACGGCGACTCCTGGATCCTGCCGCCTCCCAAGAGCATGTAA

Peptide Sequence

PEP ID	Os12t0563700-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:23118859:23122699:-1 gene:Os12g0563700 transcript:Os12t0563700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 35 description:Pectin lyase fold domain containing protein. (Os12t0563700-01)
Sequence	MEIISPSSSSNNNSPVLATFLVVLVVLLASSRPASSQNQQSFTINPGGAAAARPGGGKGG GGGGGPGSFSDFLTQNVQHYVLSEQKYAGKVKALDAELSAAEAGAARYVVSGDGKGKFRT ITEAIKAVPEYNKKRVILDIRPGTYKEKLLIPFTKPFITFVGNPRSPPTIMWDDRAATHG KDGQPMGTMLSATVAVEADYFMASSIIFKNNAPMAAPGAHGGQAVALRVFGSKVAMYNCT IDGGQDTLYDHKGLHYFKNCLIRGSVDFIFGFGRSLYADCTIESVTKEVAVVTAQQRSKN IAEAIDTGFSFLRCKISGIGQIYLGRAWGDSSRVVYSYTTMGKEVVPIGWDGWEVQKPEH SGIYYGEYKCSGPGALPSKRIGWSLVLSDIQAKPFTGSHFVYGDSWILPPPKSM

Transcript Sequence

Transcript ID	Os12t0563700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:23118859:23122699:-1 gene:Os12g0563700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 35 description:Pectin lyase fold domain containing protein. (Os12t0563700-01)
Sequence	CATTCAATAACACCCCCCCCCCAAAAAATAATACTTTATTCCTCTCTCTTAATTTTATTT TTTTACTTTGTTTGAGAGAGAGAGGATCAATAATTTCTTGTTGAAAAATGGAGATTATTA GTCCTAGTAGTAGCAGCAATAACAATTCACCTGTTCTTGCAACATTTCTTGTGGTTCTTG TAGTGCTCCTAGCATCATCACGGCCAGCCTCGTCGCAGAACCAGCAATCCTTCACCATCA ACCCCGGCGGCGCCGCGGCGGCGAGGCCCGGCGGCGGTAAAGGCGGCGGCGGCGGCGGCG GGCCGGGCAGCTTCAGCGACTTCCTGACCCAGAACGTGCAGCACTACGTGCTGAGCGAGC AGAAGTACGCCGGGAAGGTGAAGGCGCTGGACGCGGAGCTGTCGGCAGCGGAGGCCGGCG CGGCGAGGTACGTGGTGAGCGGCGACGGGAAGGGGAAGTTCAGGACCATCACCGAGGCCA TCAAGGCCGTGCCGGAGTACAACAAGAAGAGGGTCATCCTCGACATCAGGCCCGGCACCT ACAAGGAGAAGCTGTTGATCCCGTTCACGAAGCCGTTCATCACGTTCGTGGGGAACCCGA GGAGCCCGCCGACGATCATGTGGGACGACAGGGCGGCGACGCACGGCAAGGACGGCCAGC CCATGGGCACCATGCTCTCCGCCACCGTCGCCGTCGAGGCCGACTACTTCATGGCCTCCA GCATCATCTTCAAGAACAACGCGCCGATGGCGGCGCCGGGAGCGCATGGAGGGCAGGCGG TGGCGCTGCGGGTGTTCGGGAGCAAGGTGGCGATGTACAACTGCACCATCGACGGCGGGC AGGACACGCTGTACGACCACAAGGGCCTCCATTACTTCAAGAACTGCCTCATCCGTGGCA GCGTCGACTTCATCTTCGGCTTCGGCAGGTCCCTCTACGCGGATTGCACGATTGAGTCGG TGACGAAGGAGGTGGCGGTGGTGACGGCGCAGCAGAGGAGCAAGAACATTGCCGAGGCCA TCGACACCGGGTTCTCCTTCCTGCGCTGCAAGATCAGCGGCATTGGGCAGATCTACCTGG GGCGGGCATGGGGTGACTCGTCCCGGGTGGTTTACTCCTACACCACCATGGGCAAGGAGG TTGTGCCGATCGGTTGGGACGGCTGGGAAGTCCAGAAACCCGAGCATAGCGGGATATACT ACGGAGAGTACAAGTGCAGTGGGCCCGGGGCGCTGCCTAGCAAGAGGATCGGGTGGTCGC TGGTGCTGAGCGACATCCAGGCCAAGCCCTTCACCGGATCACACTTCGTCTACGGCGACT CCTGGATCCTGCCGCCTCCCAAGAGCATGTAATTCTGCCTGGGCTGGGCTAGCTAACCAC AACATGTGTTGTGTAGGGCCGTGATTTTTTCCAGCCCATTGGGCCGACACCCTCTTGACT GGTTGCAGTTAAGCAGAGGTTGGTTTTATTATTTGTTTGGAACTATGATTTGAAGATCAT ATCCAAGCATGCATGCACATACTTTGCATTATTGGGGGGAGCATGATGTTCTGAGGAGCG GCTGATGAGAATCTGGAATGAGTAGTTCTACAAGCTTATGGCTTCTTTTGTATTCGGATT CTGATAATCTGAGTGAGAATCTGTGTTGTTTGAGAAGCTG