Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0562900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:23080046:23084534:1 gene:Os12g0562900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Prefoldin domain containing protein. (Os12t0562900-01);Similar to prefoldin subunit 3. (Os12t0562900-02)
Sequence

ATGGCGGCGGCGGCGGCCTCCTCCTCCTCCTCGTCGGCGGCGGCGACGCCGCAGGGGGTG
ACGGAGCGGCGGGGCATCCCGGCGGCGTCCTTCGTCGAGGACGTCGAGACCTACCTCCGC
CAGGCCGGGCTCGACGTCAACTCCGGCCTCGCCTTCCTCCAGGAAAGGCTGCAGCAGTAC
AAAATAGTGGAGATGAAACTTCTAGCACAACAGAGAGATCTTCAGGCAAAAATTCCTGAT
ATAGAGAAGTGCTTGGATATTGTTGCAACTTTACAAGCTAAAAAAGCTTTGGGTGAGGCA
CTCACAGCCGATTTTGAATTATCTGAGGGAATCTACTCCCGTGCGAAAATCGAGGACACC
GATTCTGTGTGCCTATGGTTGGGTGCAAATGTAATGCTGGAGTACTCCTGCGACGAGGCC
AACGCCCTCTTGAAAAAGAATCTGGAAAACGCCAAGGCCAGTTTAGAAGTCCTTGTTGCT
GATCTCCAGTTCTTGCGGGACCAACAAACGATCACTCAGGTTACAATTGCTCGGGTGTTC
AACTGGGACGTGCACCAACGGAGAAGCAAGCAAGCTATCAAAGAAACCTGA

Peptide Sequence

PEP ID

Os12t0562900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:23080046:23084534:1 gene:Os12g0562900 transcript:Os12t0562900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Prefoldin domain containing protein. (Os12t0562900-01);Similar to prefoldin subunit 3. (Os12t0562900-02)
Sequence

MAAAAASSSSSSAAATPQGVTERRGIPAASFVEDVETYLRQAGLDVNSGLAFLQERLQQY
KIVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKALGEALTADFELSEGIYSRAKIEDT
DSVCLWLGANVMLEYSCDEANALLKKNLENAKASLEVLVADLQFLRDQQTITQVTIARVF
NWDVHQRRSKQAIKET

Transcript Sequence

Transcript ID

Os12t0562900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23080046:23084534:1 gene:Os12g0562900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Prefoldin domain containing protein. (Os12t0562900-01);Similar to prefoldin subunit 3. (Os12t0562900-02)
Sequence

AATTTGGGCCTTCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCAACTCCCTCGAGATTT
CTCATGGCGGCGGCGGCGGCCTCCTCCTCCTCCTCGTCGGCGGCGGCGACGCCGCAGGGG
GTGACGGAGCGGCGGGGCATCCCGGCGGCGTCCTTCGTCGAGGACGTCGAGACCTACCTC
CGCCAGGCCGGGCTCGACGTCAACTCCGGCCTCGCCTTCCTCCAGGAAAGGCTGCAGCAG
TACAAAATAGTGGAGATGAAACTTCTAGCACAACAGAGAGATCTTCAGGCAAAAATTCCT
GATATAGAGAAGTGCTTGGATATTGTTGCAACTTTACAAGCTAAAAAAGCTTTGGGTGAG
GCACTCACAGCCGATTTTGAATTATCTGAGGGAATCTACTCCCGTGCGAAAATCGAGGAC
ACCGATTCTGTGTGCCTATGGTTGGGTGCAAATGTAATGCTGGAGTACTCCTGCGACGAG
GCCAACGCCCTCTTGAAAAAGAATCTGGAAAACGCCAAGGCCAGTTTAGAAGTCCTTGTT
GCTGATCTCCAGTTCTTGCGGGACCAACAAACGATCACTCAGGTTACAATTGCTCGGGTG
TTCAACTGGGACGTGCACCAACGGAGAAGCAAGCAAGCTATCAAAGAAACCTGATCATCA
TACCCGCAGATTCTACCAGCCAAAATGAGATCGCGACATTTTTGTACTTCTTGCCACCTC
TGGCAGTCTAGGCCATCGTAGCATGTGCCCTCTGTTGGCGCCTTGCCGTGTAACAGTGTA
TCAGGTTTTATGGTGTTGGATTGTTGGAACTCTGTTTGCCTTGCAAGTAGAAATTGGTGT
TTGTTTTCACTTCGGTTCGCGTGATGGAACATATTTTGAGGAGTAAAAATCTTAGCGGTT
TTCAG