Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0561500-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:23000258:23000963:-1 gene:Os12g0561500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os12t0561500-00)
Sequence

ATGGCGTCGTCGCCGCCGCTTGTCGCCTGCGTCCTCCTCGCCGCCGTCGTTTTCACCGCC
GTGGCGCCGCCGCCGGCGGGCGCCGTCTGCGTTCCGCGCAACGGGAAGGCGGCGCCGGGG
AAGCCCGGGATGTCACCGGCGCCGCCGAAGAAGCTGACGCCCGCGCCGCCGACGACGCCG
CCGCCGAAGGCGAAGCCGATCCTTCCCGGCCCCGGCGGCGACCTCGTGAAGGCGCTGTGC
GCGAAGACGGACTACCCGGTGGTGTGCCAGATGACGGTGGTGCCGCCGCCGGCGGCGGGG
GCGGCGGCGAAGCTGGACGCCACGGCGGTGCTGCGGCTGGCGATGGGCGCGGTGCGCGCC
AAGGCGGCGGCGGCGAAGAAGGCGGCGGGGGCGCTCGCCGCGGACGCGAGGACGCCGGCG
CTGGCGAAGCCGGTGCTCCGGGACTGCATGGACTCGTACGACGACATCGCGTACAGCCTC
GACGAGGCCGACAAGGCCATGGCCGCCGGCGACAAGGACACGACGGGCACCATGCTCGAC
ACGGCCCGCACCGACGTCGACACCTGCGACCAGGGCTTCGAGGAACGCGACGGCGACATC
CCGCCGCTCATGTCCAAGCAGGACGCCGAGCTCGCCAAGCTCGCCAGCAACTGCATCGCC
ATCGCCGTCGCCGCCGGCCTCCGCTCCAGCAGCTAG

Peptide Sequence

PEP ID

Os12t0561500-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:23000258:23000963:-1 gene:Os12g0561500 transcript:Os12t0561500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os12t0561500-00)
Sequence

MASSPPLVACVLLAAVVFTAVAPPPAGAVCVPRNGKAAPGKPGMSPAPPKKLTPAPPTTP
PPKAKPILPGPGGDLVKALCAKTDYPVVCQMTVVPPPAAGAAAKLDATAVLRLAMGAVRA
KAAAAKKAAGALAADARTPALAKPVLRDCMDSYDDIAYSLDEADKAMAAGDKDTTGTMLD
TARTDVDTCDQGFEERDGDIPPLMSKQDAELAKLASNCIAIAVAAGLRSSS

Transcript Sequence

Transcript ID

Os12t0561500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23000258:23000963:-1 gene:Os12g0561500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os12t0561500-00)
Sequence

TCTCGTCGCCATGGCGTCGTCGCCGCCGCTTGTCGCCTGCGTCCTCCTCGCCGCCGTCGT
TTTCACCGCCGTGGCGCCGCCGCCGGCGGGCGCCGTCTGCGTTCCGCGCAACGGGAAGGC
GGCGCCGGGGAAGCCCGGGATGTCACCGGCGCCGCCGAAGAAGCTGACGCCCGCGCCGCC
GACGACGCCGCCGCCGAAGGCGAAGCCGATCCTTCCCGGCCCCGGCGGCGACCTCGTGAA
GGCGCTGTGCGCGAAGACGGACTACCCGGTGGTGTGCCAGATGACGGTGGTGCCGCCGCC
GGCGGCGGGGGCGGCGGCGAAGCTGGACGCCACGGCGGTGCTGCGGCTGGCGATGGGCGC
GGTGCGCGCCAAGGCGGCGGCGGCGAAGAAGGCGGCGGGGGCGCTCGCCGCGGACGCGAG
GACGCCGGCGCTGGCGAAGCCGGTGCTCCGGGACTGCATGGACTCGTACGACGACATCGC
GTACAGCCTCGACGAGGCCGACAAGGCCATGGCCGCCGGCGACAAGGACACGACGGGCAC
CATGCTCGACACGGCCCGCACCGACGTCGACACCTGCGACCAGGGCTTCGAGGAACGCGA
CGGCGACATCCCGCCGCTCATGTCCAAGCAGGACGCCGAGCTCGCCAAGCTCGCCAGCAA
CTGCATCGCCATCGCCGTCGCCGCCGGCCTCCGCTCCAGCAGCTAG