Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0560600-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:22951705:22953819:1 gene:Os12g0560600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0560600-01)
Sequence

ATGGGGTCGTCGTCGAAGGTGGTGCGGCCGGAGGAGGTGCTGGATTCGCTCGCCAACGAC
GGCACCATCGACGCGCTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGAGGATATG
AAGAAAAATACTATGATGATGGTGGAGCAAAGCAGAGTTCTAAACACTCCTGGAGCTGAG
AAGAAGACCAAGAGGGAGTTGTTTGATGCCCTTCGGCAGGAATTGGAAAATCCAGTCCTT
GAGAAAGCTTCAAGGGAAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGGAAAGAG
ATTACTGACACTATTGAGAGTGTCTTCTGCCGCCTCAGCGGGATCGACATGATGCCACCT
CCACCTTCAACATCTATTCCTTCTCACCAAGAGAGAGAAAGAAACATGGCTGCAGATGGG
GGTGAGAAGAGCAAGGAGATTGATACCCCGGAAAAACCATCGTCATCATCAAGGAAGAGA
CCCTATTCTGATACCACTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGTGCTACAAGC
CAGCATGATGGGTCTGAGGATAGCAGCCAGAAGTGA

Peptide Sequence

PEP ID

Os12t0560600-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:22951705:22953819:1 gene:Os12g0560600 transcript:Os12t0560600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0560600-01)
Sequence

MGSSSKVVRPEEVLDSLANDGTIDALRMKIIAQLKANEDMKKNTMMMVEQSRVLNTPGAE
KKTKRELFDALRQELENPVLEKASREVWDLILENGGLGKEITDTIESVFCRLSGIDMMPP
PPSTSIPSHQERERNMAADGGEKSKEIDTPEKPSSSSRKRPYSDTTTKGAGAVPNGGATS
QHDGSEDSSQK

Transcript Sequence

Transcript ID

Os12t0560600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22951705:22953819:1 gene:Os12g0560600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0560600-01)
Sequence

AACCGAAACCGGAAAGAAACCCTAGACCTCCGTCTCCGGCGACCCTCCCCTCACCTCCTC
GCCGCGGCTCCCCCCGCCTGACCTCCGCGCGCCCCCCGTCGACTCCCCCCCGCGAATCCG
GATCCCGCGCGCGCGAGGAAGGAGGGGGGGAGGAGGAGCGGGAGATGGGGTCGTCGTCGA
AGGTGGTGCGGCCGGAGGAGGTGCTGGATTCGCTCGCCAACGACGGCACCATCGACGCGC
TCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGAGGATATGAAGAAAAATACTATGA
TGATGGTGGAGCAAAGCAGAGTTCTAAACACTCCTGGAGCTGAGAAGAAGACCAAGAGGG
AGTTGTTTGATGCCCTTCGGCAGGAATTGGAAAATCCAGTCCTTGAGAAAGCTTCAAGGG
AAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGGAAAGAGATTACTGACACTATTG
AGAGTGTCTTCTGCCGCCTCAGCGGGATCGACATGATGCCACCTCCACCTTCAACATCTA
TTCCTTCTCACCAAGAGAGAGAAAGAAACATGGCTGCAGATGGGGGTGAGAAGAGCAAGG
AGATTGATACCCCGGAAAAACCATCGTCATCATCAAGGAAGAGACCCTATTCTGATACCA
CTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGTGCTACAAGCCAGCATGATGGGTCTG
AGGATAGCAGCCAGAAGTGATGCTTGTCGATGCTGCAGAATTTTTTCCTTCCAACAGGCT
GAATAAGCCATTGTGTTTTTATGGTTTAATTACAAAAATCCTTCATATCCGTGTAGTTCA
CAATGTACAATAGAGTAAAATGTGTTTATGATTGCTGTTTATGCT