Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0560500-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:22948747:22951053:-1 gene:Os12g0560500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pseudouridine synthase domain containing protein. (Os12t0560500-01);Similar to pseudouridine synthase family protein. (Os12t0560500-02)
Sequence

ATGTCGGCGGCAACCGGGGAGTACCCGGTCCCGGTCTCCCCTCCCTACCCGGCGGCGTCC
AAGGACGTGGAGCTCCGGCGCGCCATGACGGCCTCGGCGCGCTCCGCCGCCTACTCCTCC
GCGCCCGTCGTGTTCGAGGACGAGTGGCTCGCCGTCGTCGACAAGCCCGCGGGAGTCTAC
TGCGACGCCCTCCTCTCCGCTCTCCCTTGCTCCGCTGCCACATTAGGGGATGAAGCAACT
AAACCTAACCTTCACCTCGCCAACAGGCTAGACCGTGATACCAGTGGGCTCATGGTTATT
ACCAAATGCAATAAGGTTGCTGGGAAGCTAGTGAAGGCGTTTACAGAGCACAAAGTTAAG
AAAACATATCTAGCTCTTTGCATAGGTTACCCACCAGCATGGGAGAAGATTAAGATATGC
TCTGGCCATGGTCGATCAAAACATGGTGCTTGGCGTGTGTACGCTATGTCTGATGTTGGA
CGATCACTACCAGGGGGTTCCGTTGTACGCGACATGAGTACACGATTTGAAGTTCTGGGA
ATCAATGGCAAGGGACAGTTTAGAGAACCATCTAATTTTGAAGTTGATGAAACAGAGTCT
ATTACCGTACAAGAGAAGGCAGCTGACCTGACTTCAGATGGTGATGAGAAGAACAGCATA
ATTTTGGTTAGAGCCTATCCTCAGAGTGGACGAACACATCAGATTCGTCTGCACTGTCAG
TATCTTGGGTTCCCTATCAGAGGTGATGTGAAGTACAGCGGAGTTATTGAGTGGAATGGT
GTGGATTATGATGGCCATGCATTGCATGCTGAGAGCTTGTCATTTGTACACCCAGTCACT
GGATTGCCAGTCACCTTCCGGTCACCTCTCCCTTCATGGGCGAATGAATTTATTTCGACG
ATGGCATAA

Peptide Sequence

PEP ID

Os12t0560500-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:22948747:22951053:-1 gene:Os12g0560500 transcript:Os12t0560500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pseudouridine synthase domain containing protein. (Os12t0560500-01);Similar to pseudouridine synthase family protein. (Os12t0560500-02)
Sequence

MSAATGEYPVPVSPPYPAASKDVELRRAMTASARSAAYSSAPVVFEDEWLAVVDKPAGVY
CDALLSALPCSAATLGDEATKPNLHLANRLDRDTSGLMVITKCNKVAGKLVKAFTEHKVK
KTYLALCIGYPPAWEKIKICSGHGRSKHGAWRVYAMSDVGRSLPGGSVVRDMSTRFEVLG
INGKGQFREPSNFEVDETESITVQEKAADLTSDGDEKNSIILVRAYPQSGRTHQIRLHCQ
YLGFPIRGDVKYSGVIEWNGVDYDGHALHAESLSFVHPVTGLPVTFRSPLPSWANEFIST
MA

Transcript Sequence

Transcript ID

Os12t0560500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22948747:22951053:-1 gene:Os12g0560500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pseudouridine synthase domain containing protein. (Os12t0560500-01);Similar to pseudouridine synthase family protein. (Os12t0560500-02)
Sequence

ACCCCTCCTCCTCCACTCGCCCCGCTTCGCCGCCGCACTGACCACGCCGCCGCCGCCGCC
GCTGCCACCGGCGCGCCGCCTCGTCGCCGCCGCTGCAGGAGGAGACCTATCGCTCGCGAT
GTCGGCGGCAACCGGGGAGTACCCGGTCCCGGTCTCCCCTCCCTACCCGGCGGCGTCCAA
GGACGTGGAGCTCCGGCGCGCCATGACGGCCTCGGCGCGCTCCGCCGCCTACTCCTCCGC
GCCCGTCGTGTTCGAGGACGAGTGGCTCGCCGTCGTCGACAAGCCCGCGGGAGTCTACTG
CGACGCCCTCCTCTCCGCTCTCCCTTGCTCCGCTGCCACATTAGGGGATGAAGCAACTAA
ACCTAACCTTCACCTCGCCAACAGGCTAGACCGTGATACCAGTGGGCTCATGGTTATTAC
CAAATGCAATAAGGTTGCTGGGAAGCTAGTGAAGGCGTTTACAGAGCACAAAGTTAAGAA
AACATATCTAGCTCTTTGCATAGGTTACCCACCAGCATGGGAGAAGATTAAGATATGCTC
TGGCCATGGTCGATCAAAACATGGTGCTTGGCGTGTGTACGCTATGTCTGATGTTGGACG
ATCACTACCAGGGGGTTCCGTTGTACGCGACATGAGTACACGATTTGAAGTTCTGGGAAT
CAATGGCAAGGGACAGTTTAGAGAACCATCTAATTTTGAAGTTGATGAAACAGAGTCTAT
TACCGTACAAGAGAAGGCAGCTGACCTGACTTCAGATGGTGATGAGAAGAACAGCATAAT
TTTGGTTAGAGCCTATCCTCAGAGTGGACGAACACATCAGATTCGTCTGCACTGTCAGTA
TCTTGGGTTCCCTATCAGAGGTGATGTGAAGTACAGCGGAGTTATTGAGTGGAATGGTGT
GGATTATGATGGCCATGCATTGCATGCTGAGAGCTTGTCATTTGTACACCCAGTCACTGG
ATTGCCAGTCACCTTCCGGTCACCTCTCCCTTCATGGGCGAATGAATTTATTTCGACGAT
GGCATAAGTTCTTTCAACGTTATTATGAACTTGTGGATGCATTGCCTCCCAATTGATGCT
GATTTTTTATTTTTTAACCAAGAGCACATCCCTAAACTGTCGAAAGCAACTCTTGGAGCT
ATCTTCGGGGAGAAGTATTGGTCAGTGCCCAGTTGTCATATAACAATCTCCTCCAGCAAA
ACAGTGCCTTCTTGGTCGTTGTTCGTGGATATCAGTACTTTGTG