Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0557800-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:22723146:22726841:-1 gene:Os12g0557800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0557800-01)
Sequence	ATGAGGAGCATCCATCACCCCAATCTCCTCCTCCTCCGCCGCCGCCGCTGCCGCCGCCTC TCCGGCGCAAATCGCCGCCCCGAAACCCCACCGAGATCCAGCCTCTCCACCAAATCCGCC GCGAACCCACCGGACCCCGCCGACCCTGCCCGCGCCGCCTCGATCTTGGCCGAGGATGAC TGGTTCCCCCGTCTCAACGCCGAGTTCGCCGCCGCGCTCCCCCGCCTCGGCCCCCGCTTC GTCGTCCGCGCGCTTCGTGCGGCGGCGGAGAGGGAGGGGTTGGGGGAGCCGCTGCTCTGC GTGCGGCTCTACGTGTGGGCGTCGCGGTTCGGCGCCCACTTCGCGCGCGACGGCGGCGTG CGGCGGGCGCTCGTGGGCGCGCTGTGGCGGCGCGGGCCGGTGGTGCTGTCGGGGAGGCTG GTGGCGGAGGTGAGGGGTTGCGGGTGCGAGGTGTCGGAGGAGCTGGTGTGCGCGCTGGTG GAGAGCTGGGGCAGGCTGGGGCTCGCACGCTACGCGCACGAGGTGTTCGTGCAAATGCCG CGGCTGGGTCTGAGGCCCAGCACGGCGGTGTACACCGCGTACCTCAGGTTCCAGCAGATG CCCGCCGACGGGTGCCGGCCCGACCACTTCACGTACAACTCGCTCGTCCACGGCGTGTGC CGGCGCGGGATCGTCGATGAGGCGGTCCGGCTGGTGAGGCAGATGGAGGGGGAGGGGATC AGGCCGAACGTGTTCACGTACACCATGCTGGTGGACGGGTTCTGCAATGCCGGCAGGGTG GAGGAGGCGTTCCGTATGCTGGACAAGATGAAGGAGAAGGGCGTGGCGCCGAGCGAGGCC ACTTACAGGACACTGGTTCATGGCGTGTTTCGCTGCTTGGAGAGAGACAAGGCATACAGG ATGTTGAGTGATTGGCTAGGCCATGAGACGTCCCTTCACCCGAGCGCATGCCACACGATG CTGTATTGCCTGTCGAAGAAGGACATGGCCAAAGAGGCAGTTGAGTTTGAGAAGAGGATG AGTGCTAGGGGTTATCTCCTTGACAGCACAGCATTTGGCATTGTCATGTCTTGTGCTCTG AAATGCCTGGAGGTGAGTGATCTATGTGAGTTACTAGATTCTTTCATTAAGAATGGCGGG AATCCAGGATTTGATGTATATATTATGGTAATCAAATCCTTGCTGAACTGCAAGAATTTT TCGAAGGCAAACCACTATTTGGGGCACATGGTTTTAAAGGGACTCTTGTCTAGTGTGATG TCTTACAACATGGTGATAGATTGCTTCGTGAAGGCCGGGGCAGTTGATAAAGCAGAGGAG ATTGTCAAGGAGATGCAAGACAAAGGTTTCTTGCCTAACCTTGTCACCTTTAACACACTA ATAAGTGGATATTCAAAATTAGGGAATGTACATAATGCAAAGGTTGTTCTTAAGATGCTT ATGGAACATGGTTTCATGCCAGATATCATTACATTTACCTCTCTTATTGATGGCCTGTGC AATACCCATCAACTGGATGATGCTTTTGTTTGCTTTGAAGAGATGGCAGAGTGGGGTGTT AGACCAAATGCTCAGACTTACAATGTATTAATGCACACACTTTGTTCAGCAGGGCATGTT AACAAGGCTATTGATCTTCTTAATAAAATGAAAATAGATGGCGTTACTCCTGATGCATAT TCCTTCAATGCCCTCATCTTGAGTTTTTGCCGGATGAGGAAGGTAGATAAAGCTGAAGAT ATTTTCAATGACATGGTGAGATTTGGTGTGGTTCCAGACAGTTACACATACAATTCCCTG ATAAAAGCTCTATGTGATGAAAGGAGAGTCAATAAGGCCAAAGAAATTCTATTTGCAAGG GAGCGCAGTGGCTGCAGCACGAGCAATAATCAATCATATTGGCCAATTGTTGCTGCACTT GCAAAAATGGGTCAATTCAGTGAGGCAGGAGAGTTAATGGATAAATACCTCAGTAGAAAT GCTCAGTCGAGTTGTGGCTCTAATCAGAGCATAGAGTCTGAAGTTGCTGTTCAAGTTGTC AATGCGTGA

Peptide Sequence

PEP ID	Os12t0557800-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:22723146:22726841:-1 gene:Os12g0557800 transcript:Os12t0557800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0557800-01)
Sequence	MRSIHHPNLLLLRRRRCRRLSGANRRPETPPRSSLSTKSAANPPDPADPARAASILAEDD WFPRLNAEFAAALPRLGPRFVVRALRAAAEREGLGEPLLCVRLYVWASRFGAHFARDGGV RRALVGALWRRGPVVLSGRLVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQMP RLGLRPSTAVYTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGI RPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYR MLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCAL KCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVM SYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKML MEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHV NKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSL IKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAGELMDKYLSRN AQSSCGSNQSIESEVAVQVVNA

Transcript Sequence

Transcript ID	Os12t0557800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:22723146:22726841:-1 gene:Os12g0557800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0557800-01)
Sequence	GAGCCAGAGAGGCAGTAGTGATTAGTGAACACCCAGACCAGAAAGGCGGCGATTTTTGTT GGATGCAAACCGCAAATGAGGAGCATCCATCACCCCAATCTCCTCCTCCTCCGCCGCCGC CGCTGCCGCCGCCTCTCCGGCGCAAATCGCCGCCCCGAAACCCCACCGAGATCCAGCCTC TCCACCAAATCCGCCGCGAACCCACCGGACCCCGCCGACCCTGCCCGCGCCGCCTCGATC TTGGCCGAGGATGACTGGTTCCCCCGTCTCAACGCCGAGTTCGCCGCCGCGCTCCCCCGC CTCGGCCCCCGCTTCGTCGTCCGCGCGCTTCGTGCGGCGGCGGAGAGGGAGGGGTTGGGG GAGCCGCTGCTCTGCGTGCGGCTCTACGTGTGGGCGTCGCGGTTCGGCGCCCACTTCGCG CGCGACGGCGGCGTGCGGCGGGCGCTCGTGGGCGCGCTGTGGCGGCGCGGGCCGGTGGTG CTGTCGGGGAGGCTGGTGGCGGAGGTGAGGGGTTGCGGGTGCGAGGTGTCGGAGGAGCTG GTGTGCGCGCTGGTGGAGAGCTGGGGCAGGCTGGGGCTCGCACGCTACGCGCACGAGGTG TTCGTGCAAATGCCGCGGCTGGGTCTGAGGCCCAGCACGGCGGTGTACACCGCGTACCTC AGGTTCCAGCAGATGCCCGCCGACGGGTGCCGGCCCGACCACTTCACGTACAACTCGCTC GTCCACGGCGTGTGCCGGCGCGGGATCGTCGATGAGGCGGTCCGGCTGGTGAGGCAGATG GAGGGGGAGGGGATCAGGCCGAACGTGTTCACGTACACCATGCTGGTGGACGGGTTCTGC AATGCCGGCAGGGTGGAGGAGGCGTTCCGTATGCTGGACAAGATGAAGGAGAAGGGCGTG GCGCCGAGCGAGGCCACTTACAGGACACTGGTTCATGGCGTGTTTCGCTGCTTGGAGAGA GACAAGGCATACAGGATGTTGAGTGATTGGCTAGGCCATGAGACGTCCCTTCACCCGAGC GCATGCCACACGATGCTGTATTGCCTGTCGAAGAAGGACATGGCCAAAGAGGCAGTTGAG TTTGAGAAGAGGATGAGTGCTAGGGGTTATCTCCTTGACAGCACAGCATTTGGCATTGTC ATGTCTTGTGCTCTGAAATGCCTGGAGGTGAGTGATCTATGTGAGTTACTAGATTCTTTC ATTAAGAATGGCGGGAATCCAGGATTTGATGTATATATTATGGTAATCAAATCCTTGCTG AACTGCAAGAATTTTTCGAAGGCAAACCACTATTTGGGGCACATGGTTTTAAAGGGACTC TTGTCTAGTGTGATGTCTTACAACATGGTGATAGATTGCTTCGTGAAGGCCGGGGCAGTT GATAAAGCAGAGGAGATTGTCAAGGAGATGCAAGACAAAGGTTTCTTGCCTAACCTTGTC ACCTTTAACACACTAATAAGTGGATATTCAAAATTAGGGAATGTACATAATGCAAAGGTT GTTCTTAAGATGCTTATGGAACATGGTTTCATGCCAGATATCATTACATTTACCTCTCTT ATTGATGGCCTGTGCAATACCCATCAACTGGATGATGCTTTTGTTTGCTTTGAAGAGATG GCAGAGTGGGGTGTTAGACCAAATGCTCAGACTTACAATGTATTAATGCACACACTTTGT TCAGCAGGGCATGTTAACAAGGCTATTGATCTTCTTAATAAAATGAAAATAGATGGCGTT ACTCCTGATGCATATTCCTTCAATGCCCTCATCTTGAGTTTTTGCCGGATGAGGAAGGTA GATAAAGCTGAAGATATTTTCAATGACATGGTGAGATTTGGTGTGGTTCCAGACAGTTAC ACATACAATTCCCTGATAAAAGCTCTATGTGATGAAAGGAGAGTCAATAAGGCCAAAGAA ATTCTATTTGCAAGGGAGCGCAGTGGCTGCAGCACGAGCAATAATCAATCATATTGGCCA ATTGTTGCTGCACTTGCAAAAATGGGTCAATTCAGTGAGGCAGGAGAGTTAATGGATAAA TACCTCAGTAGAAATGCTCAGTCGAGTTGTGGCTCTAATCAGAGCATAGAGTCTGAAGTT GCTGTTCAAGTTGTCAATGCGTGAAGTGTGATCTATTGACTGCATGCTAATTTACACATG AATGATGCCCTATCCTCAGTGAAAGGTGCAAAACAGCCTCATCTTTGCTTAAGATGAAGG ATTTGTACCTTCCAACGCCATAGAGATATTAAGCTCTATGGCATCGATGGAATTTCAAAA ATTATATGGATTTAAGCTTTCTACTCAGGAAACAATTGCAGAACAAATCGGTGCATTCCT TTTAACACTTTCACATGTTCTGGTAACTTTGGTGCATCATAGGCTTCATAAAAAGTTCAC TATTTTTGATCTTGTGAATACTGCTAAAGACAAGACATAAGCTAAGAAAAACTTAACTGC ATTTGTAATTTTCCTTGTATTTGATTAGCTGTGAAGCATCATCATACAAATTGAAAGCGA AAACATTCAAAAAGATTTTGGTTTAAAATAATTGTGAACAGAAAATAGTCACTGGAAAAA ATCAGTGTATCACGATCAGTAGTCTACCAACATGCCCCCACTAAAGATGTAACACCAACT AAGCATTCCAATGAACTTTGAGAACTTGCTCACAGAATTTGGCTGGGAAGGAAACAATGA TGCTTTTATACTCACATGGACTGGAAAAGCAGCAGGGATTTCAGCTTGATATTGCTCTTT TGTACATTCTGACATTGTAGGTTCGATAGGTACAGTGGTCCTCCAGTCCTGATTTGTTGT TGCATTCATTAGTCCTGTATTGTTCTCAACTTCCTGAACCATTTGTTTTGGTTTACTAAT TGGTTTTTATTGTTTTTACAGGGCAGTTGGCTTATGAACGGTATACGTGCAATGCTTTTC TCTTGGGAAACAAATACCATACAGAAACAAAAAGCTGAGTGGTTCCTCCCTTGCTGAGGA CCAGTGGTTCTTGGCTGTTTCAAAGCTCACTGTCAAGTTAGAGATTATCAGTGCTCTAAT CCCTTCACACTAGTTCCAAAGTCCAAACCTAAAGGAATTTCCTTTCATGTTAATGATCAC ATGAAGTAAAGAGCTGCCTCCTCCTGATATTGAGTTCTCTATTATAAATTTTAGATTTCT GTGTTCTGGAGGTGAAGAACACTGATCCACACATGCGCGTACATTTGTTGCTGCTGTTTA TATGTAAACATCTAGCAACATTATCGGTGGAGTGATTATTTCGCATCATGGTGATGTGGC TAACCGGCTACAGTGTTGTAGATTTGAGATATGCTAAAAGTTACTTGTGCCAACTGCCAA GAACAAAGTGACATCTGGAGAGAGAGAGAGAGAAATATTTGCCAGCTATATATTTTTTGA ATTGAGATTGAAAGAACAGTGACAATTAGAGCTGCATATCGTCAGCTTGTTGAATGTTTT TTTTTTAACTTGTTGAATGTATGTTTAATTTGCC