Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0556500-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:22648120:22656258:1 gene:Os12g0556500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin binding protein-like family protein. (Os12t0556500-01)
Sequence

ATGGACGGCAACAAGCGGCGGCGGACGCGGAGGCGGCTATCCCTGGCCACCGCCACCGCC
GGCGACGGCGACGGCGACGGCATGGCTGCGGCGCCGCCTCCGGCGAAGCGGCAGCGTTGT
CATGCGGTGGAGGAGCTCCCGTCGCCGAGGAGGGGGCTCCTGCGGCAGAGCGTGCTCGTC
GTCGTCTTCCTCAGGCGCGCCATGCTCCTCGCCTGGGGGGGCAGGAAGGCGGACGACGAC
GACGGCGGCGGCGGCGCGGCGGTCGGCGTCTCCCGGATTGGTGGCGTGGTGAGAGATGAA
CTCCGTCGCTGTCTTGGACCAATTGCGAGGAGCTTCTCGCTGCAGTTTAGCAAACTGGAA
AGGAAACTGGAAAGCAGACTGGAAAGAATTGACCAGCGGATTGAGAATCTCAACCATAAA
GTGGACCAAATAACACCGTTACGACGTAGCCACTGCAATCACCAGCACCCAATGCAGGGG
ACAAATAATGAAGGGGCCAATGCTGAAGGAGTGGAGACAAATGAAGACGATGACAAAAAC
ACATGTGTTCGGCTTCGATTTCTGAATGAAATGAAACCTCCTATTTACCATGATGATGAG
TTAAAAGCTGAGAACAGCGAAGATATTCGGATTGGCATATTTGATGGTGAACAGATGATA
AAATCAGGCCCTCTTTCGAAGGTGAAACTTGAGATATTGGCCCTTGAGGGAAATTTTCCG
TATAATAGCATGGAGAGTTGGACTACTAAGGAGTTCAACGAACACAGAGCTTGTGGCCGG
GATGAAAGAGGCGATGTGTTGGCAGGTGAACGCACTGTCCAGCTGATCAATGGAGAGGCC
TCTCTTGGTGCCATCAAATTCAGAGAAGGGTCATGCAAGGCCCGCAAGGGTAAGTTCATC
CTTGCAGCAAGAGTTTGTGACAGTGCAAGAACTGGTGTTCATGTTCAAGAGGCTGTCATG
ACGCCTGTGGTTGTGCAGGATCGCAGAAATAAATCAAATGAAAAGAGTCATCCTCCAAAG
CTGGACGACAAGGTTCATCGCTTGGAGGAAATTGCAATTAATGGAATATACTGCAAGAGG
CTTGTGGAGAAGGGCATAAAAACTGTGAAAGACTTCTTAAAGGCTCTAAACAAGGATCCT
GATAACTTGGCCAATATTCTCCACATGAAGAAAGGATCCAAAGCCTGGGAGAAAATGGTG
ACACATGCCAGGGACTGCAGCCTCGAAGGCAAGCCCGAGCTGAAATCGTATCCCGTTGCT
CAGACAAACGTGGTGCTCATCTTCGATTGCGTGAATTCTCTTGTTGGGGCATGGTTTGGT
GGCAGTTACATTGCATCTGACAGCCTCAGTTCAGCTCAGCAGGTCATAGTGGACAAGTTG
AAAGGGGAAGCATATCAACTATTAGATCAGCTTCCTTTTGATTATATAATGGAAGGCGGG
TTTCCAATACTGAATCCTATGAATGCGAATGCCGATTATCGAGCTCAAGGTACTGAAGCA
GTTGGGGGCTTGGATCATGCTCAGATTGATCCATCATTTGCAAATGCAAACTATCAAGAT
CAAAGTACTGCACAAGCTGGTCAGGAGCAATTCTCCTCTGCTGCTGTAGCTGGTTGGTGC
CAGGATTCAATTGCGCAACCTAGCTCTTCTCACCAGACAAATCATGTAGTCTACCCTGGT
GGAGCTCAAGTGAATTACAGTCACCAAACTAACTGCGTTGCGCCTTGTGATTACCCATGC
CAAGGAGCATCCATGGTACCAGGATTTGATCAGGTGGAACTTCAGGGGAGGCCCTTCTTG
GGCAGAGATGACTTGGAAGCATCAACTTCTGCTCACAACAATCTGCCATTTCCACCACAG
CAGCAGTTTACATTCAGTGGTGATCCAGGATCATCAGCTCAGGTGAACATGCAGAGCCAG
GGGCACTCAAAGCCATCAACTTCTACTACTCAAGGCAATCTTCCAACACAACAGCAATGG
TCCCAATCTCAATACCATGGAAACAACTGGGGATAA

Peptide Sequence

PEP ID

Os12t0556500-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:22648120:22656258:1 gene:Os12g0556500 transcript:Os12t0556500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin binding protein-like family protein. (Os12t0556500-01)
Sequence

MDGNKRRRTRRRLSLATATAGDGDGDGMAAAPPPAKRQRCHAVEELPSPRRGLLRQSVLV
VVFLRRAMLLAWGGRKADDDDGGGGAAVGVSRIGGVVRDELRRCLGPIARSFSLQFSKLE
RKLESRLERIDQRIENLNHKVDQITPLRRSHCNHQHPMQGTNNEGANAEGVETNEDDDKN
TCVRLRFLNEMKPPIYHDDELKAENSEDIRIGIFDGEQMIKSGPLSKVKLEILALEGNFP
YNSMESWTTKEFNEHRACGRDERGDVLAGERTVQLINGEASLGAIKFREGSCKARKGKFI
LAARVCDSARTGVHVQEAVMTPVVVQDRRNKSNEKSHPPKLDDKVHRLEEIAINGIYCKR
LVEKGIKTVKDFLKALNKDPDNLANILHMKKGSKAWEKMVTHARDCSLEGKPELKSYPVA
QTNVVLIFDCVNSLVGAWFGGSYIASDSLSSAQQVIVDKLKGEAYQLLDQLPFDYIMEGG
FPILNPMNANADYRAQGTEAVGGLDHAQIDPSFANANYQDQSTAQAGQEQFSSAAVAGWC
QDSIAQPSSSHQTNHVVYPGGAQVNYSHQTNCVAPCDYPCQGASMVPGFDQVELQGRPFL
GRDDLEASTSAHNNLPFPPQQQFTFSGDPGSSAQVNMQSQGHSKPSTSTTQGNLPTQQQW
SQSQYHGNNWG

Transcript Sequence

Transcript ID

Os12t0556500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22648120:22656258:1 gene:Os12g0556500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin binding protein-like family protein. (Os12t0556500-01)
Sequence

GAGAGCGGAGAGCGCGGGAACGGAGGAGAGAGAGAGAGAGAGAGAGAGAAGCACCGGGAG
GAAGAAGGAAGCGGATCATCTCGAGGTCCATGGACGGCAACAAGCGGCGGCGGACGCGGA
GGCGGCTATCCCTGGCCACCGCCACCGCCGGCGACGGCGACGGCGACGGCATGGCTGCGG
CGCCGCCTCCGGCGAAGCGGCAGCGTTGTCATGCGGTGGAGGAGCTCCCGTCGCCGAGGA
GGGGGCTCCTGCGGCAGAGCGTGCTCGTCGTCGTCTTCCTCAGGCGCGCCATGCTCCTCG
CCTGGGGGGGCAGGAAGGCGGACGACGACGACGGCGGCGGCGGCGCGGCGGTCGGCGTCT
CCCGGATTGGTGGCGTGGTGAGAGATGAACTCCGTCGCTGTCTTGGACCAATTGCGAGGA
GCTTCTCGCTGCAGTTTAGCAAACTGGAAAGGAAACTGGAAAGCAGACTGGAAAGAATTG
ACCAGCGGATTGAGAATCTCAACCATAAAGTGGACCAAATAACACCGTTACGACGTAGCC
ACTGCAATCACCAGCACCCAATGCAGGGGACAAATAATGAAGGGGCCAATGCTGAAGGAG
TGGAGACAAATGAAGACGATGACAAAAACACATGTGTTCGGCTTCGATTTCTGAATGAAA
TGAAACCTCCTATTTACCATGATGATGAGTTAAAAGCTGAGAACAGCGAAGATATTCGGA
TTGGCATATTTGATGGTGAACAGATGATAAAATCAGGCCCTCTTTCGAAGGTGAAACTTG
AGATATTGGCCCTTGAGGGAAATTTTCCGTATAATAGCATGGAGAGTTGGACTACTAAGG
AGTTCAACGAACACAGAGCTTGTGGCCGGGATGAAAGAGGCGATGTGTTGGCAGGTGAAC
GCACTGTCCAGCTGATCAATGGAGAGGCCTCTCTTGGTGCCATCAAATTCAGAGAAGGGT
CATGCAAGGCCCGCAAGGGTAAGTTCATCCTTGCAGCAAGAGTTTGTGACAGTGCAAGAA
CTGGTGTTCATGTTCAAGAGGCTGTCATGACGCCTGTGGTTGTGCAGGATCGCAGAAATA
AATCAAATGAAAAGAGTCATCCTCCAAAGCTGGACGACAAGGTTCATCGCTTGGAGGAAA
TTGCAATTAATGGAATATACTGCAAGAGGCTTGTGGAGAAGGGCATAAAAACTGTGAAAG
ACTTCTTAAAGGCTCTAAACAAGGATCCTGATAACTTGGCCAATATTCTCCACATGAAGA
AAGGATCCAAAGCCTGGGAGAAAATGGTGACACATGCCAGGGACTGCAGCCTCGAAGGCA
AGCCCGAGCTGAAATCGTATCCCGTTGCTCAGACAAACGTGGTGCTCATCTTCGATTGCG
TGAATTCTCTTGTTGGGGCATGGTTTGGTGGCAGTTACATTGCATCTGACAGCCTCAGTT
CAGCTCAGCAGGTCATAGTGGACAAGTTGAAAGGGGAAGCATATCAACTATTAGATCAGC
TTCCTTTTGATTATATAATGGAAGGCGGGTTTCCAATACTGAATCCTATGAATGCGAATG
CCGATTATCGAGCTCAAGGTACTGAAGCAGTTGGGGGCTTGGATCATGCTCAGATTGATC
CATCATTTGCAAATGCAAACTATCAAGATCAAAGTACTGCACAAGCTGGTCAGGAGCAAT
TCTCCTCTGCTGCTGTAGCTGGTTGGTGCCAGGATTCAATTGCGCAACCTAGCTCTTCTC
ACCAGACAAATCATGTAGTCTACCCTGGTGGAGCTCAAGTGAATTACAGTCACCAAACTA
ACTGCGTTGCGCCTTGTGATTACCCATGCCAAGGAGCATCCATGGTACCAGGATTTGATC
AGGTGGAACTTCAGGGGAGGCCCTTCTTGGGCAGAGATGACTTGGAAGCATCAACTTCTG
CTCACAACAATCTGCCATTTCCACCACAGCAGCAGTTTACATTCAGTGGTGATCCAGGAT
CATCAGCTCAGGTGAACATGCAGAGCCAGGGGCACTCAAAGCCATCAACTTCTACTACTC
AAGGCAATCTTCCAACACAACAGCAATGGTCCCAATCTCAATACCATGGAAACAACTGGG
GATAAAGCAGAAATGTAGAATATGTCATTTCATTTAGTTCACCGATTTTTTTAGGAATCA
ATTGTTGAATTGTCACCTGTATTGTAATTTGTAATCCTCTCACTTTTTGGTCTCTGAGCA
GCTTAGACTATTGCTCTGTACTTCACCCATTGATGTGAAACTCTGGCTGAAAGAGTGGCG
CTAATCTAAATGTTAGATTTCCAAGATTTTCCTAAAAGTT