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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0556400-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:22641391:22643084:1 gene:Os12g0556400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GAG1At protein. (Os12t0556400-01);Similar to GAG1At protein. (Os12t0556400-02)
Sequence

ATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGGGTGGAGCAC
TACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATC
TTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTAC
ATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCA
AAAGAGTGA

Peptide Sequence

PEP ID

Os12t0556400-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:22641391:22643084:1 gene:Os12g0556400 transcript:Os12t0556400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GAG1At protein. (Os12t0556400-01);Similar to GAG1At protein. (Os12t0556400-02)
Sequence

MGGGEATSGGGGGFRARVEHYLYSGEKKHVVAGIAIFAAIFGVPWYLMTRGAKHQSHQDY
MERANKARSERLSSGQASSPKE

Transcript Sequence

Transcript ID

Os12t0556400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22641391:22643084:1 gene:Os12g0556400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GAG1At protein. (Os12t0556400-01);Similar to GAG1At protein. (Os12t0556400-02)
Sequence

GACGACCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGC
CGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAG
GAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGGGTGGAGCACTACCTGT
ACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCG
TCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAA
GAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGT
GAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATC
TGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTA
GGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAATGCAGCTAGCTCTCT
TTACATTCCGCACTATTCTACAAGGAGATGATTGACAAAGACAAACACCTGATTTATTTG
TCTCAAATGACGATTCTAGAGCCAATTACCTTGACTTGAG