Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0556100-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:22616804:22622177:1 gene:Os12g0556100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:drought-induced 19-7 description:Similar to fiber protein Fb2. (Os12t0556100-01)
Sequence

ATGGACATGGACTCGTGGGAGCGCCTCGCCGCGGACGCCAGGCTGCAGGGTTCGTGCTTC
GATGCGTTGATTGGGATGGAGGAGGCGGAGGGGAGCGAAGGCGAGGAGGAGGCGGCGGAG
GTGGCGTGCCCGTTCTGCGACGAGGAGTTCGACGGATTCGGGCTTTGCTGCCACATCGAG
GACGAACACCAGGCGGAGAACAGGGCCGGGGTGTGTCCAATTTGCTACGATGCGGTTGGG
ATGGACTTGGTTAGTCACATCACTTCGGAACATCCCAGTTTCTTCAAGGGCAAATGGAGA
AATCGGCGAGTTTCACATGGATCACATTCTTCAACGCGTGCCACATTAAAAAAGGACGCG
GCATATCTGCAGTACCGTTATGGAGGATCCACACGTGCTGCTTCACACAACACAGATCCT
GATCCTCTACTATCCTCTTTTGTTGGTAACTTCACCGACACAGATTTACCAAAAGATGTA
CAACAAGAGTTCCGAGATGAAACGGATGAGAAAAGTGATTCCTTAGTACAGAAGGAACAG
AAACCGGTGGAAAGTGCTGATGAGCCTCTGCTCCCTGAGGTCAAGGAAGAGAGAACTCGG
AGGAGCCAATTCGTGCAGGGGCTGGTATTGTCCCTGATGTTTGATGACATCTTGTGA

Peptide Sequence

PEP ID

Os12t0556100-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:22616804:22622177:1 gene:Os12g0556100 transcript:Os12t0556100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:drought-induced 19-7 description:Similar to fiber protein Fb2. (Os12t0556100-01)
Sequence

MDMDSWERLAADARLQGSCFDALIGMEEAEGSEGEEEAAEVACPFCDEEFDGFGLCCHIE
DEHQAENRAGVCPICYDAVGMDLVSHITSEHPSFFKGKWRNRRVSHGSHSSTRATLKKDA
AYLQYRYGGSTRAASHNTDPDPLLSSFVGNFTDTDLPKDVQQEFRDETDEKSDSLVQKEQ
KPVESADEPLLPEVKEERTRRSQFVQGLVLSLMFDDIL

Transcript Sequence

Transcript ID

Os12t0556100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22616804:22622177:1 gene:Os12g0556100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:drought-induced 19-7 description:Similar to fiber protein Fb2. (Os12t0556100-01)
Sequence

GCCACACACTCTCCCTCTCCGTGTCGGTGTCTCATCTCTCTCTCTCTTCCCATCCGCCGC
CAAAACCCTAGCCCCCCCTAAACCCCGCCGCCCGATCGCCGCCGCCGCCGCCGCCCTCCC
GCTTTCGCGGCCTCCGGTTTGGGCGCCCCCCCCCCGCCCGGCCCAAGAACCGTGTGCCCC
CGCCGCCGCCGCCGCGATGGACATGGACTCGTGGGAGCGCCTCGCCGCGGACGCCAGGCT
GCAGGGTTCGTGCTTCGATGCGTTGATTGGGATGGAGGAGGCGGAGGGGAGCGAAGGCGA
GGAGGAGGCGGCGGAGGTGGCGTGCCCGTTCTGCGACGAGGAGTTCGACGGATTCGGGCT
TTGCTGCCACATCGAGGACGAACACCAGGCGGAGAACAGGGCCGGGGTGTGTCCAATTTG
CTACGATGCGGTTGGGATGGACTTGGTTAGTCACATCACTTCGGAACATCCCAGTTTCTT
CAAGGGCAAATGGAGAAATCGGCGAGTTTCACATGGATCACATTCTTCAACGCGTGCCAC
ATTAAAAAAGGACGCGGCATATCTGCAGTACCGTTATGGAGGATCCACACGTGCTGCTTC
ACACAACACAGATCCTGATCCTCTACTATCCTCTTTTGTTGGTAACTTCACCGACACAGA
TTTACCAAAAGATGTACAACAAGAGTTCCGAGATGAAACGGATGAGAAAAGTGATTCCTT
AGTACAGAAGGAACAGAAACCGGTGGAAAGTGCTGATGAGCCTCTGCTCCCTGAGGTCAA
GGAAGAGAGAACTCGGAGGAGCCAATTCGTGCAGGGGCTGGTATTGTCCCTGATGTTTGA
TGACATCTTGTGAAGAGTTACATTCTAAAAATTGATTGAAGGCAACAGTCGCTTCCGCGA
AACAGTATAATACCAAGCGGAAGTTGCTGATGTCTAAGCTGATTTGCCATCTGAAGATGA
CAGCATTGTTCTAGGATCATCAGAAGGATGAATTTGTGAATATATGGATGCTCGTTAGCA
TGTCACGGGTGTGTCGCCTCAACAAATAAGATTATATGTATATTTTGGTAACATCACGAA
TACCTGTGTTATCAGGAGACCCAAGTGGTAACATCACGAATACCTGTGTTATGGTCCATG
TAATCAAGGTATGTAAGATCAAGGTACACGCGTGACAAATCGATGAAAATTCAAGGTAGG
CATCAGCATCAACTCCACACAATTGAAGGTTTGAAGAAACAATGACATTCTTCAGCCTTG
GAAGTATACATATCAACTTGAAATATTATATTCATACATAAATGAAGTGTGTGTGCATGT