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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0555500-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:22600049:22601182:1 gene:Os12g0555500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 10A description:Probenazole-inducible protein PBZ1. (Os12t0555500-01)
Sequence

ATGGCTCCGGCCTGCGTCTCCGACGAGCACGCCGTCGCGGTGTCGGCGGAGCGGCTGTGG
AAGGCGTTCATGGACGCGTCCACTTTGCCCAAGGCCTGCGCCGGCTTGGTCGACGACATT
GCGGTCGAGGGGAACGGTGGTCCGGGCACCATCTACACCATGAAGCTTAACCCTGCCGCG
GGTGTGGGAAGCACATACAAGACCCGGGTGGCGGTGTGCGACGCCGCAAGTCATGTCCTA
AAGTCGGATGTGCTCGAGGCAGAAAGCAAGGTGGGGAAGCTCAAGTCACACTCGACGGAG
ACGAAGCTTGAGGCCACCGGCGATGGCTCCTGTGTGGCCAAGCTCAAGGTGGAGTACGAG
CTCGAGGACGGCAGCTCACTGTCGCCGGAGAAGGAGAAGGACATCGTGGATGGCTACTAT
GGCATGCTCAAGATGATCGAGGACTACCTCGTCGCTCACCCTGCCGAATACGCCTAA

Peptide Sequence

PEP ID

Os12t0555500-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:22600049:22601182:1 gene:Os12g0555500 transcript:Os12t0555500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 10A description:Probenazole-inducible protein PBZ1. (Os12t0555500-01)
Sequence

MAPACVSDEHAVAVSAERLWKAFMDASTLPKACAGLVDDIAVEGNGGPGTIYTMKLNPAA
GVGSTYKTRVAVCDAASHVLKSDVLEAESKVGKLKSHSTETKLEATGDGSCVAKLKVEYE
LEDGSSLSPEKEKDIVDGYYGMLKMIEDYLVAHPAEYA

Transcript Sequence

Transcript ID

Os12t0555500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22600049:22601182:1 gene:Os12g0555500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 10A description:Probenazole-inducible protein PBZ1. (Os12t0555500-01)
Sequence

ACAAGCACAAGCACAAGCAGCTCTAGCTAGCTACAGGCATCAGTGGTCAGTAGAGTGATC
AGTTGCAACTAGCTAGCTAGTTAGATTATATCTTCAGTGATGGCTCCGGCCTGCGTCTCC
GACGAGCACGCCGTCGCGGTGTCGGCGGAGCGGCTGTGGAAGGCGTTCATGGACGCGTCC
ACTTTGCCCAAGGCCTGCGCCGGCTTGGTCGACGACATTGCGGTCGAGGGGAACGGTGGT
CCGGGCACCATCTACACCATGAAGCTTAACCCTGCCGCGGGTGTGGGAAGCACATACAAG
ACCCGGGTGGCGGTGTGCGACGCCGCAAGTCATGTCCTAAAGTCGGATGTGCTCGAGGCA
GAAAGCAAGGTGGGGAAGCTCAAGTCACACTCGACGGAGACGAAGCTTGAGGCCACCGGC
GATGGCTCCTGTGTGGCCAAGCTCAAGGTGGAGTACGAGCTCGAGGACGGCAGCTCACTG
TCGCCGGAGAAGGAGAAGGACATCGTGGATGGCTACTATGGCATGCTCAAGATGATCGAG
GACTACCTCGTCGCTCACCCTGCCGAATACGCCTAAGATGAAGAGGAATACTGCCTCTAT
CCAGTATATCCCACCTAGAGTGAGTGATAATTAAATAATGAGAGCCGCAGAAATGTCCAA
ATTCTCGTGGCGTTTGAGTCCGTGAGAGTAATTTCGTGCTTTAAGTTTGTGGTTGTGTTT
ATGTGCCTTTCTATGGTCGTATTCAGTGTTAAAGTTATCATTTTGCTTCATCAATGGGTG
AATAAAGAGAGGCAAGTCTGAATGTGTTCTGCT