Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0555200-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:22591681:22593505:1 gene:Os12g0555200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 10B description:Similar to Probenazole-inducible protein PBZ1. (Os12t0555200-01)
Sequence

ATGGCTCCGGCCTTCGTCTCCGACGAGCGCGCCGTCGCGGTGTCGGTGGAGAGGCTGTGG
AAGGTCTGCTTGGACGTGCACTCCCTGCCCAAGGTCTGCGCCGGATTCATCGACGCCGTC
GAGGTCGAGGGGAATGGCGGGCCGGGCACCATCCACATCATGAAGCTTAACCCTGCCGCG
GACGCAGGGAGCGTATACAAGACCAAAATAGTGGTGTGCGACAGCGCAACTCACGTGCTA
AAGGTTGAGGTGTTGGAGGTTAAGAGCAGGGTGGGCAACCTCAAGTCGCACTCGACGGAG
ACGAAGCTCGAGGCCACCGGCGACGCCACCTGCGTGGCCAAGCTCACGGTGGAGTACGAG
CTCGAAGACGGCGCCTCGCTGTCGCCGGAGCAGGAGAAGATGATCGTCGACGGCTACTTC
AGCATGCTCCAGATGATCGAGGCGTACCTCGTCGCTCACCCTGCTGAGTACGCCTAA

Peptide Sequence

PEP ID

Os12t0555200-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:22591681:22593505:1 gene:Os12g0555200 transcript:Os12t0555200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 10B description:Similar to Probenazole-inducible protein PBZ1. (Os12t0555200-01)
Sequence

MAPAFVSDERAVAVSVERLWKVCLDVHSLPKVCAGFIDAVEVEGNGGPGTIHIMKLNPAA
DAGSVYKTKIVVCDSATHVLKVEVLEVKSRVGNLKSHSTETKLEATGDATCVAKLTVEYE
LEDGASLSPEQEKMIVDGYFSMLQMIEAYLVAHPAEYA

Transcript Sequence

Transcript ID

Os12t0555200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22591681:22593505:1 gene:Os12g0555200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 10B description:Similar to Probenazole-inducible protein PBZ1. (Os12t0555200-01)
Sequence

AGAAGCAAAAGCAGCTGAGCTGAGCTAGCTATAGCCATCACAGCAAGTGTCAGGTGGAAA
CTAGCTTAGATAGAGATGGCTCCGGCCTTCGTCTCCGACGAGCGCGCCGTCGCGGTGTCG
GTGGAGAGGCTGTGGAAGGTCTGCTTGGACGTGCACTCCCTGCCCAAGGTCTGCGCCGGA
TTCATCGACGCCGTCGAGGTCGAGGGGAATGGCGGGCCGGGCACCATCCACATCATGAAG
CTTAACCCTGCCGCGGACGCAGGGAGCGTATACAAGACCAAAATAGTGGTGTGCGACAGC
GCAACTCACGTGCTAAAGGTTGAGGTGTTGGAGGTTAAGAGCAGGGTGGGCAACCTCAAG
TCGCACTCGACGGAGACGAAGCTCGAGGCCACCGGCGACGCCACCTGCGTGGCCAAGCTC
ACGGTGGAGTACGAGCTCGAAGACGGCGCCTCGCTGTCGCCGGAGCAGGAGAAGATGATC
GTCGACGGCTACTTCAGCATGCTCCAGATGATCGAGGCGTACCTCGTCGCTCACCCTGCT
GAGTACGCCTAAAAATATTGTGGTCATGTTACTGTGGCGTGGTCGCATGTGAGAAGAATT
ATTCTGTGTTTAAGGTTATGTAATAATTTCAGTATTGTGTTTTTGCTTCACGAGTGAATA
AAATACACATAAGAATGTGTTGTGTTTGATGGTTAATATATATGGAAGATTGTGGATCAG
TGTAAAAGTAGATTAGAAATATAATAATATTTGTGAGTTTATTTGATTACGGAGGTTATC
TGTACTTTTTATAAAGTTATAACACT