Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0555100-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:22585181:22586562:1 gene:Os12g0555100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Probenazole-inducible protein PBZ1. (Os12t0555100-01)
Sequence

ATGGCTCCGGTCTGCATCTCCGACGAGCGTTCAGTTGCAGTTTCGGCGGAGCGGTTTTGG
AAGGTCTTCTCGAACCCGCCCGCCATGCCCAAGGTCTGCGCTGGTTTCTTCGACGCTGCT
GAGGTTGAGGGGGATGGTGGGCCGGGCACCGTTGTCATTCTGAAGTTTAACCCTGCTGTT
AAGCAAGGGTTATACAAGACACGTGTGGTGGCACGTGACAACGCTTCTCATTTTCTCAAG
TCAGAGGTGCTGGAGGTGGCGCTTGGCAGGGCAGGCAAGCTCAAGACACACTTGACGGAG
ACGAAGCTTGAGGCCACCGGTGCCGGCTCCTGTATGGCCAAGCTCAGGGTGGAGTGCGAG
CCTGAAGACGGTGGCTCGTTGTCGCCGGAGAAGCAGAAGATAATCCTCGAGGGCTACTTC
GGCATGCTCAAGATGATTGAGAACTACCTTGTGGCTCACCCTGCCGAGTACGCCTAA

Peptide Sequence

PEP ID

Os12t0555100-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:22585181:22586562:1 gene:Os12g0555100 transcript:Os12t0555100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Probenazole-inducible protein PBZ1. (Os12t0555100-01)
Sequence

MAPVCISDERSVAVSAERFWKVFSNPPAMPKVCAGFFDAAEVEGDGGPGTVVILKFNPAV
KQGLYKTRVVARDNASHFLKSEVLEVALGRAGKLKTHLTETKLEATGAGSCMAKLRVECE
PEDGGSLSPEKQKIILEGYFGMLKMIENYLVAHPAEYA

Transcript Sequence

Transcript ID

Os12t0555100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22585181:22586562:1 gene:Os12g0555100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Probenazole-inducible protein PBZ1. (Os12t0555100-01)
Sequence

GCAGCAACAACTGTACAAACAGCTGGCTAGCGAGCTACCATCAGTGACCAGTAGTGTGCA
TTGTTAGCGGTAGGAAGTGTTACGGGTCGATCGTCACTGATGGCTCCGGTCTGCATCTCC
GACGAGCGTTCAGTTGCAGTTTCGGCGGAGCGGTTTTGGAAGGTCTTCTCGAACCCGCCC
GCCATGCCCAAGGTCTGCGCTGGTTTCTTCGACGCTGCTGAGGTTGAGGGGGATGGTGGG
CCGGGCACCGTTGTCATTCTGAAGTTTAACCCTGCTGTTAAGCAAGGGTTATACAAGACA
CGTGTGGTGGCACGTGACAACGCTTCTCATTTTCTCAAGTCAGAGGTGCTGGAGGTGGCG
CTTGGCAGGGCAGGCAAGCTCAAGACACACTTGACGGAGACGAAGCTTGAGGCCACCGGT
GCCGGCTCCTGTATGGCCAAGCTCAGGGTGGAGTGCGAGCCTGAAGACGGTGGCTCGTTG
TCGCCGGAGAAGCAGAAGATAATCCTCGAGGGCTACTTCGGCATGCTCAAGATGATTGAG
AACTACCTTGTGGCTCACCCTGCCGAGTACGCCTAAAAATAAGTGTTACAAACCAACATA
ATGCATTCATCGCGTGCATGATAATTAAATAACGTTCGTGAGCCACAACAAATCCAATTT
CTTGTGGTGTTTGATTTCATGTGGGTGGTTGTGTGTGAAAGATAACTTGTGTTATTTCAG
TAGTTGTCATAGTGTTGTCTGTGTGTGTGTGTGTGTGTGTGATATTTTCAGTGTTGGTGA
GATCATTTTGTTTCATAAGTGAATAAAGGAATACACAGGTGAATGCGGTGTGTTTGGTGG
AGCATTTA