Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0554400-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:22519016:22529230:-1 gene:Os12g0554400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRS130 description:Tetratricopeptide-like helical domain containing protein. (Os12t0554400-01);Similar to predicted protein. (Os12t0554400-02)
Sequence	ATGGCGAACTACCTCGCGCAGTTCCAGACCATCAAGTCCTCCTGCGACCGCATCGTCGTC GCCGTTGAAGATGTGAGTGACTTGTGGCTCAATGTGAAAGAAAGTTTCGAGCAACGCTTA CCAGTGAAGAAGGCCTGCCTCAATAACAAGGCGAGGAATCCTGTTTTTGTGGAAAACCTA CCAGCTGAGTTTATACAGACCACTGATTCGAGGCTACGTAGTCGATTTCCACAAGATCAA TACTTGTTTTGGTTCCGGGAACCATATGCAACTGTTGTTCTTGTCAGTTGCGAGGATCTT GATGAGTTCAAGACCATTCTTAAGCCTCGCCTCAAATTGATTGTGCAAAATGATGAGAGG GAATGGTTCATTGTATTTGTGTCTAAGGCCCATCCTAGCAATGACCAAGCATCTAAGATG GCAAAGAGAGTATATGCTAGGCTTGAGAGCGATTTCAACACTAAAAAAAGAGAAAGATGC TGTAAATTTGATCTCCATGGACCTGATGCGGAATTCTGGGATGATTTTGACTCCAAAATG GTGGACTGCATTAGAAACACATTGGATAGGCGGGTTCAATTTTATGAAGAGGAAATTCGC AGGTTAAGTGAGCAGAGATTCACTCCGATATGGAACTTCTGCAACTTTTTTATTCTTAAG GAAAGCTTGGCTTTCATGTTTGAGATGACTAATCTTCATGAAGATTCACTCCGTGAATAC GACGAGCTTGAACTATGCTACTCAGAATCAGTTAATTCTCCTGGAAAACATCGAGAATTT GGAGGATTGGATACTGGTGATGATCAAGCGGCGCTGCTAAATCCAGGATTTAAAGCATTG ACCCAAATTGTCCAGGATGATGTGTTCAGAGAATTTGAGTTTAGACAATACATATTTGCT TGCCAGGCTAAGTTATTGTTTAAATTGCATCGCCCAATTGAGGTTGCTGCAAGAGGATAT GCTTTTGTGGTTAGCTTTTCCAAGACGCTAGCCTTGCAGGAGAATGGTCTACCATTTTGT TTTCGTGAAGTATGGGTGATAACTGCATGTATGGATTTAATAAAAGCAACAACCTCACAC TATGATGGTACAGCTGTTGCTATCGACTCAGAGAGGGAGTTCTGTCGTATTCAGGGTGAC CTCTATTCTCTGTGCCGTATTAAGTTTCTGAGGCTTGCTTATTTGATTGGTTATGGAGTT GAGATAGAAAAAAGTCCAGTCAACAGTGCATCTTTAAGCATGCTACCATGGCCAAAGCCA GCTACATGGCCTTCTATTCCACCGGATTCATCAGCAGAAACAATGGCAAAGGAGAAGATG ATTCTCCAAGCAAAATCAAGAGAAAAGATCTTCAATATTCACAGGAAACCACTGCCATTA GAACCTTCTTTGCTTCTTCGTGAGGCTAATAGGCGTAGGGCTTTTCTTTCTGTTGGAAAT ATATCTGAATTATATGATTCAGGTGATGGTTCAGGTCTGGATGCAAATTCAAAACCTTCG CCCAACAAATCTGCTTCGAACTACATGGCCAGGACAATGTCAGGGCCAGCGACATCTGAG ACTTCTCTGCCAGTTGATCGCCCCATGAGGTTGTCAGAAATTCATGTTGCAGCTGAGCAT GCACTGAAGCAGACAGTATCTGACCCTAATTTTATGACATCACTTTCATCACTAGAAGAA TTTGAGAAAAGATATATGGAGCTTACTAAAGGCGCAGCTGACAATTATCATCACTCTTGG TGGAAAAGACATGGAGTTGTGCTAGATGGAGAAATTGCAGCTCTATTCTTTAAGCATGAA AATTATGATTTGGCTGCAAAGTCCTATGAGAAAGTTTGTGCTCTCTATTCTGCAGAAGGC TGGGAAGAGCTGTTGGCAGATGTTCTTCCTGATCTTGCAGAATGCCAGAAGATTCTCAAT GATGAAGCTGGTTATTTGACTTCCTGTGTGAAGTTACTTTCTCTAGAGAGTGGCTTATTT TCATCTAAAGAGCGGCAAGCTTTCCAGTCAGAGGTTGTTCGGCTTGCTCACAGTGAAATG AAGCATCCTGTGCCCCTTGATGTCTCATCACTTATTACATTTGCTGGAAATCCTGCTCCA CCACTAGAGTTGTGTGATGGAGATCCTGGTACACTATCTGTAGCTGTTTGGAGTGCCTTC CCGGATGACATCACACTCGAGTCTCTCAGCTTAAGATTGTCGGCTTCCTCTAGTGCAGAT GAAGGTCTTAAGGCGATAAAGAGTTCAGATGCTCGAGTTCTTGTACCCGGTAGAAATATC ATCACCTTCGACATTCCTCCTCAAAAGCCTGGATCCTATGTGTTGGGTGCTCTGACGGGC CAGATTGGCAAGCTATCATTCAGATCGCATGGATTTTCTCAAGATGGTCCAGTGGACACT GATGAATTCATGAGCTTTGAGAAGCCAACAAGGCCTGTTTTGAAGGTGAGAAAACCAAGG GCTTTAGTTGATATTACTCCTGCTGTGTCCTCTGCATTGCTTATGAATGAACTTCAGTGG ATTGGGTTAATTGTCAAGCCAATAGACTATTCTTTGAAAGATGGCATATTGCATATAGAT GCGGGTGCTGGACTGAAAATTGAGGAGTCCCAGATGATTGAGATAGAAACTTATGGAAGT GATGTGGAGCATGTTGGTGGTACTGATGCTTCCAAGACATCATCAAGCTCCACTGATACT CGTAAGGTTGAGAAGGTCCCTATTGAAGATGGGAAGATAAAAATACCAGACTGGGCTAGT GATGTGACTACTCTTGTATGGTTTCCTGTTCGTGCTATTGATGATACAATTGCAAGGGGT GCATCGCCAGCATCCCCTCAGAAACAGAGCATAGTAGATGGGATGAGAATGATTGCTCTC AAGCTTGAATTTGGAGTTTTTCTTAATCAAGTGTTTGAAAGGACTATCGCAGTACATTTC ACTAACCCATTCCATGTGAGCACACGCGTAGTAGATAAGTGCTATGATGGAACTCTACTA CTGCAGGTGATATTGCATTCTGAAGTGAAGGCCACTCTGCATGTAAAGGATATATGGTTG GATCTGCAATCTGGATTTGAACACACAGGAAAGGGAGATGGACGACCAACTTCGAACTTG TTCCCTCTGGTTATTGCTCCTTCTTCGAGAGCTGGAATCTTATTTGTAATACGTTTAAGT GCCTTAGGAGATATGGATGAGCTAGAAAAGGCAGATAGCATGTTGAATATTAAGTATGGA ATATCCGGTGACAGAACAACTGGAGCACACTCTCCAGTTCCTGTTAAACCTGATGATTCT GAGGAGCTTGTATTCAAGATTGCGGTGAAGATGAAGCGCCCTGTCCTGGACCCATGTGTG GCAGTTGGGTTCCTTCCGTTTTCTTCGGACTGCTTGAGGGTTGGCCAGCTGGTCAACATG AGATGGAGGGTTGAAAGGCTGAAGAACCCGGAGGATGCCTCTCTGTTAGCCGACGAAATA CTTTATCAAGTCGACGCCAACCCACAGAACTGGATGGTTGCTGGGAGGAAATGCGGTCAC GTATCGCTGTCAAACAAACAAGGTTCAAGGATAGAGATCACGGTGACGTGCGTGCCGCTG GTGTCCGGCTACGTCCATCCGCCGCAGCTGGGCCTGCCGCACGTCGGCGAGGCCAACATC AGCTGCAACCCGGCAGGCCCTCACCTGGTGTGCGTCCTTCCTCCGACACTGAGCACCTCA TACTGCATACCGGCTTGA

Peptide Sequence

PEP ID	Os12t0554400-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:22519016:22529230:-1 gene:Os12g0554400 transcript:Os12t0554400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRS130 description:Tetratricopeptide-like helical domain containing protein. (Os12t0554400-01);Similar to predicted protein. (Os12t0554400-02)
Sequence	MANYLAQFQTIKSSCDRIVVAVEDVSDLWLNVKESFEQRLPVKKACLNNKARNPVFVENL PAEFIQTTDSRLRSRFPQDQYLFWFREPYATVVLVSCEDLDEFKTILKPRLKLIVQNDER EWFIVFVSKAHPSNDQASKMAKRVYARLESDFNTKKRERCCKFDLHGPDAEFWDDFDSKM VDCIRNTLDRRVQFYEEEIRRLSEQRFTPIWNFCNFFILKESLAFMFEMTNLHEDSLREY DELELCYSESVNSPGKHREFGGLDTGDDQAALLNPGFKALTQIVQDDVFREFEFRQYIFA CQAKLLFKLHRPIEVAARGYAFVVSFSKTLALQENGLPFCFREVWVITACMDLIKATTSH YDGTAVAIDSEREFCRIQGDLYSLCRIKFLRLAYLIGYGVEIEKSPVNSASLSMLPWPKP ATWPSIPPDSSAETMAKEKMILQAKSREKIFNIHRKPLPLEPSLLLREANRRRAFLSVGN ISELYDSGDGSGLDANSKPSPNKSASNYMARTMSGPATSETSLPVDRPMRLSEIHVAAEH ALKQTVSDPNFMTSLSSLEEFEKRYMELTKGAADNYHHSWWKRHGVVLDGEIAALFFKHE NYDLAAKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLTSCVKLLSLESGLF SSKERQAFQSEVVRLAHSEMKHPVPLDVSSLITFAGNPAPPLELCDGDPGTLSVAVWSAF PDDITLESLSLRLSASSSADEGLKAIKSSDARVLVPGRNIITFDIPPQKPGSYVLGALTG QIGKLSFRSHGFSQDGPVDTDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLMNELQW IGLIVKPIDYSLKDGILHIDAGAGLKIEESQMIEIETYGSDVEHVGGTDASKTSSSSTDT RKVEKVPIEDGKIKIPDWASDVTTLVWFPVRAIDDTIARGASPASPQKQSIVDGMRMIAL KLEFGVFLNQVFERTIAVHFTNPFHVSTRVVDKCYDGTLLLQVILHSEVKATLHVKDIWL DLQSGFEHTGKGDGRPTSNLFPLVIAPSSRAGILFVIRLSALGDMDELEKADSMLNIKYG ISGDRTTGAHSPVPVKPDDSEELVFKIAVKMKRPVLDPCVAVGFLPFSSDCLRVGQLVNM RWRVERLKNPEDASLLADEILYQVDANPQNWMVAGRKCGHVSLSNKQGSRIEITVTCVPL VSGYVHPPQLGLPHVGEANISCNPAGPHLVCVLPPTLSTSYCIPA

Transcript Sequence

Transcript ID	Os12t0554400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:22519016:22529230:-1 gene:Os12g0554400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRS130 description:Tetratricopeptide-like helical domain containing protein. (Os12t0554400-01);Similar to predicted protein. (Os12t0554400-02)
Sequence	GTCTCGTCTCCACCGAACTCTTCCACTCCTCCGCATCTCGCGATCTCTTCCCCCCCCCCC CCCCCGCGCGCCGCCTCTCTCCGGCGAACCCCTCACCGGCGGCGGCGGCGGGGCGAGTGG GACGCCGCATGGAGCAGTAGGGGACGGAGCGGAGGCTGCGTGAGGTGAAGGGCGGGCGCG GTGGCGATGGCGAACTACCTCGCGCAGTTCCAGACCATCAAGTCCTCCTGCGACCGCATC GTCGTCGCCGTTGAAGATGTGAGTGACTTGTGGCTCAATGTGAAAGAAAGTTTCGAGCAA CGCTTACCAGTGAAGAAGGCCTGCCTCAATAACAAGGCGAGGAATCCTGTTTTTGTGGAA AACCTACCAGCTGAGTTTATACAGACCACTGATTCGAGGCTACGTAGTCGATTTCCACAA GATCAATACTTGTTTTGGTTCCGGGAACCATATGCAACTGTTGTTCTTGTCAGTTGCGAG GATCTTGATGAGTTCAAGACCATTCTTAAGCCTCGCCTCAAATTGATTGTGCAAAATGAT GAGAGGGAATGGTTCATTGTATTTGTGTCTAAGGCCCATCCTAGCAATGACCAAGCATCT AAGATGGCAAAGAGAGTATATGCTAGGCTTGAGAGCGATTTCAACACTAAAAAAAGAGAA AGATGCTGTAAATTTGATCTCCATGGACCTGATGCGGAATTCTGGGATGATTTTGACTCC AAAATGGTGGACTGCATTAGAAACACATTGGATAGGCGGGTTCAATTTTATGAAGAGGAA ATTCGCAGGTTAAGTGAGCAGAGATTCACTCCGATATGGAACTTCTGCAACTTTTTTATT CTTAAGGAAAGCTTGGCTTTCATGTTTGAGATGACTAATCTTCATGAAGATTCACTCCGT GAATACGACGAGCTTGAACTATGCTACTCAGAATCAGTTAATTCTCCTGGAAAACATCGA GAATTTGGAGGATTGGATACTGGTGATGATCAAGCGGCGCTGCTAAATCCAGGATTTAAA GCATTGACCCAAATTGTCCAGGATGATGTGTTCAGAGAATTTGAGTTTAGACAATACATA TTTGCTTGCCAGGCTAAGTTATTGTTTAAATTGCATCGCCCAATTGAGGTTGCTGCAAGA GGATATGCTTTTGTGGTTAGCTTTTCCAAGACGCTAGCCTTGCAGGAGAATGGTCTACCA TTTTGTTTTCGTGAAGTATGGGTGATAACTGCATGTATGGATTTAATAAAAGCAACAACC TCACACTATGATGGTACAGCTGTTGCTATCGACTCAGAGAGGGAGTTCTGTCGTATTCAG GGTGACCTCTATTCTCTGTGCCGTATTAAGTTTCTGAGGCTTGCTTATTTGATTGGTTAT GGAGTTGAGATAGAAAAAAGTCCAGTCAACAGTGCATCTTTAAGCATGCTACCATGGCCA AAGCCAGCTACATGGCCTTCTATTCCACCGGATTCATCAGCAGAAACAATGGCAAAGGAG AAGATGATTCTCCAAGCAAAATCAAGAGAAAAGATCTTCAATATTCACAGGAAACCACTG CCATTAGAACCTTCTTTGCTTCTTCGTGAGGCTAATAGGCGTAGGGCTTTTCTTTCTGTT GGAAATATATCTGAATTATATGATTCAGGTGATGGTTCAGGTCTGGATGCAAATTCAAAA CCTTCGCCCAACAAATCTGCTTCGAACTACATGGCCAGGACAATGTCAGGGCCAGCGACA TCTGAGACTTCTCTGCCAGTTGATCGCCCCATGAGGTTGTCAGAAATTCATGTTGCAGCT GAGCATGCACTGAAGCAGACAGTATCTGACCCTAATTTTATGACATCACTTTCATCACTA GAAGAATTTGAGAAAAGATATATGGAGCTTACTAAAGGCGCAGCTGACAATTATCATCAC TCTTGGTGGAAAAGACATGGAGTTGTGCTAGATGGAGAAATTGCAGCTCTATTCTTTAAG CATGAAAATTATGATTTGGCTGCAAAGTCCTATGAGAAAGTTTGTGCTCTCTATTCTGCA GAAGGCTGGGAAGAGCTGTTGGCAGATGTTCTTCCTGATCTTGCAGAATGCCAGAAGATT CTCAATGATGAAGCTGGTTATTTGACTTCCTGTGTGAAGTTACTTTCTCTAGAGAGTGGC TTATTTTCATCTAAAGAGCGGCAAGCTTTCCAGTCAGAGGTTGTTCGGCTTGCTCACAGT GAAATGAAGCATCCTGTGCCCCTTGATGTCTCATCACTTATTACATTTGCTGGAAATCCT GCTCCACCACTAGAGTTGTGTGATGGAGATCCTGGTACACTATCTGTAGCTGTTTGGAGT GCCTTCCCGGATGACATCACACTCGAGTCTCTCAGCTTAAGATTGTCGGCTTCCTCTAGT GCAGATGAAGGTCTTAAGGCGATAAAGAGTTCAGATGCTCGAGTTCTTGTACCCGGTAGA AATATCATCACCTTCGACATTCCTCCTCAAAAGCCTGGATCCTATGTGTTGGGTGCTCTG ACGGGCCAGATTGGCAAGCTATCATTCAGATCGCATGGATTTTCTCAAGATGGTCCAGTG GACACTGATGAATTCATGAGCTTTGAGAAGCCAACAAGGCCTGTTTTGAAGGTGAGAAAA CCAAGGGCTTTAGTTGATATTACTCCTGCTGTGTCCTCTGCATTGCTTATGAATGAACTT CAGTGGATTGGGTTAATTGTCAAGCCAATAGACTATTCTTTGAAAGATGGCATATTGCAT ATAGATGCGGGTGCTGGACTGAAAATTGAGGAGTCCCAGATGATTGAGATAGAAACTTAT GGAAGTGATGTGGAGCATGTTGGTGGTACTGATGCTTCCAAGACATCATCAAGCTCCACT GATACTCGTAAGGTTGAGAAGGTCCCTATTGAAGATGGGAAGATAAAAATACCAGACTGG GCTAGTGATGTGACTACTCTTGTATGGTTTCCTGTTCGTGCTATTGATGATACAATTGCA AGGGGTGCATCGCCAGCATCCCCTCAGAAACAGAGCATAGTAGATGGGATGAGAATGATT GCTCTCAAGCTTGAATTTGGAGTTTTTCTTAATCAAGTGTTTGAAAGGACTATCGCAGTA CATTTCACTAACCCATTCCATGTGAGCACACGCGTAGTAGATAAGTGCTATGATGGAACT CTACTACTGCAGGTGATATTGCATTCTGAAGTGAAGGCCACTCTGCATGTAAAGGATATA TGGTTGGATCTGCAATCTGGATTTGAACACACAGGAAAGGGAGATGGACGACCAACTTCG AACTTGTTCCCTCTGGTTATTGCTCCTTCTTCGAGAGCTGGAATCTTATTTGTAATACGT TTAAGTGCCTTAGGAGATATGGATGAGCTAGAAAAGGCAGATAGCATGTTGAATATTAAG TATGGAATATCCGGTGACAGAACAACTGGAGCACACTCTCCAGTTCCTGTTAAACCTGAT GATTCTGAGGAGCTTGTATTCAAGATTGCGGTGAAGATGAAGCGCCCTGTCCTGGACCCA TGTGTGGCAGTTGGGTTCCTTCCGTTTTCTTCGGACTGCTTGAGGGTTGGCCAGCTGGTC AACATGAGATGGAGGGTTGAAAGGCTGAAGAACCCGGAGGATGCCTCTCTGTTAGCCGAC GAAATACTTTATCAAGTCGACGCCAACCCACAGAACTGGATGGTTGCTGGGAGGAAATGC GGTCACGTATCGCTGTCAAACAAACAAGGTTCAAGGATAGAGATCACGGTGACGTGCGTG CCGCTGGTGTCCGGCTACGTCCATCCGCCGCAGCTGGGCCTGCCGCACGTCGGCGAGGCC AACATCAGCTGCAACCCGGCAGGCCCTCACCTGGTGTGCGTCCTTCCTCCGACACTGAGC ACCTCATACTGCATACCGGCTTGATCCATCCATCATACACAGATTGTATGTTAGGCTTGT AGCCTGTAGTAGAAGAGAAATGCCACTTACACTGGTCGGCTTGAGATGTATCGCCATTTG CACCGGATGAGATGTATGCTGTTTTTGCCGAGACATTCTTTTGTGCAGATGAGTTCTTTT TCGTCAGTAACATTCAGAACGTGTTCCATTGTTTCATGTACCATAAGATAAGTAACATAA TTCTCCGTGTATATCAAATCAAGTGATAGACTGGATTTTGAAGTCT