Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0552300-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:22424368:22427381:-1 gene:Os12g0552300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os12t0552300-00)
Sequence

ATGACGCGCCGGGGAGCGGCCTCCCTCGGGAGGACGCTCGCCGGGTTCCTGGCGCATGAA
GATCCAGCCAAGGTCCTCTCCCTATTTGCGGACAAGGCCAGGCAGCATGGGGGTCTTGGC
CCCCTCGACTTCGCGTGCGCCCTGCGCGCGTGCAGGGGGAATGGCAGGCGTTGGCAGGTC
GTTCCGGAGATACACGCGAAGGCTGTCACGCGTGGTCTTGGGAAATACAGGATCGTCGGC
AACCTTCTGATTGACCTGTACTCCAAGAACGGGCTTGTTCTGCCTGCGAGGCGGGTGTTT
GAGGAGCTTTCTGCCAGGGACAATGTCTCCTGGGTGGCAATGCTGTCAGGGTATGCGCAG
AATGGCCTTGGGGAGGAAGCTCTCGGGCTGTATCGCCAGATGCATCGAGCTGGGGTTGTT
CCTACACCTTATGTTCTGTCTAGCGTCCTGAGTTCGTGCACTAAAGCGGAGCTCTTTGCG
CAAGGACGGTTGATTCATGCCCAAGGTTACAAGCACGGATTCTGCTCTGAAATCTTTGTG
GGGAATGCTGTTATCACGCTGTACTTGCGGTGCGGATCATTCAGATTGGCAGAGAGAGTA
TTTTGCGACATGCCACACCGTGACACAGTAACATTCAATACGTTGATCTCAGGACATGCT
CAGTGTGGACATGGGGAGCATGCTTTAGAGATATTTGAGGAGATGCAGTTCTCAGGGTTA
AGCCCTGATTGTGTGACCATTTCTAGTCTGCTTGCAGCTTGTGCGTCGCTTGGTGATCTT
CAAAAGGGGACGCAACTCCATTCCTATCTGTTTAAAGCAGGCATCTCTTCGGATTACATA
ATGGAAGGTTCACTCCTTGACCTCTATGTGAAATGTGGTGATGTTGAAACTGCCCTTGTG
ATCTTCAATTCGAGTGATAGGACTAACGTAGTACTCTGGAACCTGATGCTTGTGGCATTT
GGGCAGATCAATGATCTAGCAAAGTCTTTTGAGCTATTCTGTCAAATGCAGGCTGCAGGT
ATACGCCCTAACCAATTCACGTACCCATGCATTTTAAGGACTTGCACTTGCACTAGAGAA
ATTGACCTTGGAGAGCAGATCCATTCATTAAGTGTAAAAACTGGCTTCGAGTCTGATATG
TATGTTAGTGGTGTATTGATAGATATGTATTCCAAATATGGGTGGCTTGAAAAGGCAAGA
CGTGTTCTTGAAATGCTTAAAGAGAAAGACGTGGTTTCCTGGACTTCCATGATTGCTGGA
TATGTGCAACATGAGTGTTGTAAGGACGCTCTTGCAGCTTTTAAAGAGATGCAGAAATGT
GGAATTTGGCCAGATAACATAGGACTAGCAAGTGCTATAAGTGGCTGCGCTGGAATCAAT
GCAATGAGGCAAGGCTTGCAGATTCATGCTCGGATTTATGTGTCTGGTTATTCAGGAGAT
GTTTCAATTTGGAATGCATTGGTAAACCTTTATGCACGATGCGGAAGAATCAGAGAAGCT
TTCTCTTCATTCGAGGAAATTGAACATAAAGATGAGATAACATGGAACGGCCTGGTATCT
GGTTTTGCACAAAGTGGCCTACATGAAGAAGCTCTCAAGGTATTTATGCGTATGGATCAA
TCAGGTGTCAAGCATAATGTGTTCACATTTGTATCAGCTCTTAGTGCTTCAGCTAACCTT
GCAGAAATAAAACAAGGAAAACAAATACATGCCAGAGTTATTAAAACAGGTCATTCCTTC
GAAACTGAAGTTGGAAATGCTCTGATTTCCTTGTACGGGAAGTGTGGTAGCTTTGAGGAT
GCCAAGATGGAATTTTCTGAAATGTCTGAGAGAAATGAGGTGTCATGGAATACTATTATC
ACAAGCTGTTCACAGCATGGACGTGGCTTGGAGGCTTTGGATTTATTTGATCAAATGAAG
AAAGAAGGTATTAAACCAAATGATGTTACATTCATAGGTGTTTTAGCTGCTTGCAGTCAT
GTGGGATTGGTGGAGGAAGGCCTTAGTTACTTCAAATCAATGTCTGATGAGTATGGAATT
CGTCCAAGGCCTGATCATTATGCTTGTGTTATCGATATCTTTGGACGAGCTGGGCAACTT
GACCGTGCAAAGAAATTTATTGAGGAAATGCCAATTGCTGCTGATGCTATGGTTTGGAGA
ACCCTTCTCAGCGCCTGTAAAGTACACAAGAACATAGAAGTTGGAGAGTTTGCAGCCAAA
CATCTATTGGAATTGGAGCCTCATGATTCTGCATCATATGTTCTTCTCTCAAATGCATAT
GCTGTTACCGAGAAGTGGGCCAATAGGGATCAGGTCAGAAAGATGATGAGAGACAGAGGA
GTCAGAAAGGAACCAGGCCGGAGCTGGATTGAAGTAAAGAATGTGGTTCATGCATTCTTT
GTTGGTGACAGATTACACCCCTTGGCTGAGCAGATATACAATTTTTTGGCTGTTATAAAT
GATAGGGTAGCCAAAGTAGGATACAAGCAAGAGAAATATCATCTCTTCCATGATAAAGAG
CAAGAAGGGAGAGATCCTACTGATCTTGTGCACAGCGAGAAGTTAGCTGTGACTTTTGGG
TTGATGAGTTTGCCTCCCTGTATGCCCCTTCGAGTCATTAAAAATCTTCGTGTATGTAAC
GATTGCCACACTTGGATGAAATTTACTTCCGACGTCATGGGAAGACAAATTGTATTACGA
GATGTCTACAGATTTCACCATTTTAACAATGGAAGCTGTTCATGCGGAGACTTCTGGTGA

Peptide Sequence

PEP ID

Os12t0552300-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:22424368:22427381:-1 gene:Os12g0552300 transcript:Os12t0552300-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os12t0552300-00)
Sequence

MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV
VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQ
NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV
GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL
SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV
IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE
IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG
YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGD
VSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQ
SGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFED
AKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSH
VGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWR
TLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRG
VRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKE
QEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRVCNDCHTWMKFTSDVMGRQIVLR
DVYRFHHFNNGSCSCGDFW

Transcript Sequence

Transcript ID

Os12t0552300-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22424368:22427381:-1 gene:Os12g0552300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os12t0552300-00)
Sequence

CGCGGCGGCGCAAGCAGGCGACCTTGCCTCCGCCGGCGTCCGGCGACCTCGCCGCCGCCG
CCGCCACCACCGCCTCCTACCTTCTACGCATGCCATTACTCCCTCCTGCAATCGTAGCAC
CGTGAAGCACCATCTGCCCTGGAGATCCGCAGGCTGAGATGCCATCCACTGTGTCGCGCC
CCAGGTGTTCGACGGAATGACGCGCCGGGGAGCGGCCTCCCTCGGGAGGACGCTCGCCGG
GTTCCTGGCGCATGAAGATCCAGCCAAGGTCCTCTCCCTATTTGCGGACAAGGCCAGGCA
GCATGGGGGTCTTGGCCCCCTCGACTTCGCGTGCGCCCTGCGCGCGTGCAGGGGGAATGG
CAGGCGTTGGCAGGTCGTTCCGGAGATACACGCGAAGGCTGTCACGCGTGGTCTTGGGAA
ATACAGGATCGTCGGCAACCTTCTGATTGACCTGTACTCCAAGAACGGGCTTGTTCTGCC
TGCGAGGCGGGTGTTTGAGGAGCTTTCTGCCAGGGACAATGTCTCCTGGGTGGCAATGCT
GTCAGGGTATGCGCAGAATGGCCTTGGGGAGGAAGCTCTCGGGCTGTATCGCCAGATGCA
TCGAGCTGGGGTTGTTCCTACACCTTATGTTCTGTCTAGCGTCCTGAGTTCGTGCACTAA
AGCGGAGCTCTTTGCGCAAGGACGGTTGATTCATGCCCAAGGTTACAAGCACGGATTCTG
CTCTGAAATCTTTGTGGGGAATGCTGTTATCACGCTGTACTTGCGGTGCGGATCATTCAG
ATTGGCAGAGAGAGTATTTTGCGACATGCCACACCGTGACACAGTAACATTCAATACGTT
GATCTCAGGACATGCTCAGTGTGGACATGGGGAGCATGCTTTAGAGATATTTGAGGAGAT
GCAGTTCTCAGGGTTAAGCCCTGATTGTGTGACCATTTCTAGTCTGCTTGCAGCTTGTGC
GTCGCTTGGTGATCTTCAAAAGGGGACGCAACTCCATTCCTATCTGTTTAAAGCAGGCAT
CTCTTCGGATTACATAATGGAAGGTTCACTCCTTGACCTCTATGTGAAATGTGGTGATGT
TGAAACTGCCCTTGTGATCTTCAATTCGAGTGATAGGACTAACGTAGTACTCTGGAACCT
GATGCTTGTGGCATTTGGGCAGATCAATGATCTAGCAAAGTCTTTTGAGCTATTCTGTCA
AATGCAGGCTGCAGGTATACGCCCTAACCAATTCACGTACCCATGCATTTTAAGGACTTG
CACTTGCACTAGAGAAATTGACCTTGGAGAGCAGATCCATTCATTAAGTGTAAAAACTGG
CTTCGAGTCTGATATGTATGTTAGTGGTGTATTGATAGATATGTATTCCAAATATGGGTG
GCTTGAAAAGGCAAGACGTGTTCTTGAAATGCTTAAAGAGAAAGACGTGGTTTCCTGGAC
TTCCATGATTGCTGGATATGTGCAACATGAGTGTTGTAAGGACGCTCTTGCAGCTTTTAA
AGAGATGCAGAAATGTGGAATTTGGCCAGATAACATAGGACTAGCAAGTGCTATAAGTGG
CTGCGCTGGAATCAATGCAATGAGGCAAGGCTTGCAGATTCATGCTCGGATTTATGTGTC
TGGTTATTCAGGAGATGTTTCAATTTGGAATGCATTGGTAAACCTTTATGCACGATGCGG
AAGAATCAGAGAAGCTTTCTCTTCATTCGAGGAAATTGAACATAAAGATGAGATAACATG
GAACGGCCTGGTATCTGGTTTTGCACAAAGTGGCCTACATGAAGAAGCTCTCAAGGTATT
TATGCGTATGGATCAATCAGGTGTCAAGCATAATGTGTTCACATTTGTATCAGCTCTTAG
TGCTTCAGCTAACCTTGCAGAAATAAAACAAGGAAAACAAATACATGCCAGAGTTATTAA
AACAGGTCATTCCTTCGAAACTGAAGTTGGAAATGCTCTGATTTCCTTGTACGGGAAGTG
TGGTAGCTTTGAGGATGCCAAGATGGAATTTTCTGAAATGTCTGAGAGAAATGAGGTGTC
ATGGAATACTATTATCACAAGCTGTTCACAGCATGGACGTGGCTTGGAGGCTTTGGATTT
ATTTGATCAAATGAAGAAAGAAGGTATTAAACCAAATGATGTTACATTCATAGGTGTTTT
AGCTGCTTGCAGTCATGTGGGATTGGTGGAGGAAGGCCTTAGTTACTTCAAATCAATGTC
TGATGAGTATGGAATTCGTCCAAGGCCTGATCATTATGCTTGTGTTATCGATATCTTTGG
ACGAGCTGGGCAACTTGACCGTGCAAAGAAATTTATTGAGGAAATGCCAATTGCTGCTGA
TGCTATGGTTTGGAGAACCCTTCTCAGCGCCTGTAAAGTACACAAGAACATAGAAGTTGG
AGAGTTTGCAGCCAAACATCTATTGGAATTGGAGCCTCATGATTCTGCATCATATGTTCT
TCTCTCAAATGCATATGCTGTTACCGAGAAGTGGGCCAATAGGGATCAGGTCAGAAAGAT
GATGAGAGACAGAGGAGTCAGAAAGGAACCAGGCCGGAGCTGGATTGAAGTAAAGAATGT
GGTTCATGCATTCTTTGTTGGTGACAGATTACACCCCTTGGCTGAGCAGATATACAATTT
TTTGGCTGTTATAAATGATAGGGTAGCCAAAGTAGGATACAAGCAAGAGAAATATCATCT
CTTCCATGATAAAGAGCAAGAAGGGAGAGATCCTACTGATCTTGTGCACAGCGAGAAGTT
AGCTGTGACTTTTGGGTTGATGAGTTTGCCTCCCTGTATGCCCCTTCGAGTCATTAAAAA
TCTTCGTGTATGTAACGATTGCCACACTTGGATGAAATTTACTTCCGACGTCATGGGAAG
ACAAATTGTATTACGAGATGTCTACAGATTTCACCATTTTAACAATGGAAGCTGTTCATG
CGGAGACTTCTGGTGAAGTGCTTTGAAGTGAAAACCTACAATTACCAGCCCCAAGTAACC
CATTTATACTCATT