Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0547600-02
CDS Infomation	cds chromosome:IRGSP-1.0:12:22133842:22136891:-1 gene:Os12g0547600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Calmodulin-Binding Protein description:Calmodulin binding protein-like domain containing protein. (Os12t0547600-01);Hypothetical conserved gene. (Os12t0547600-02)
Sequence	ATGGCTCCTTCCACGAGTCTCCTCTCCTGGTCCTCCTCCGACGACGACGACGGCGCCGGC GCCGGCGGCGAGCTGTCCCGCCCTCGCAGGCGGTGGCGGGCGCTTGTCCTGGGGCTCGGG GTGAGGAGGAAGAGGAGCATGGAGGGGGTGTTCGGGTTCAGGGAGATGATGGGGGAGGAG TTCATGGGCATGTTCCTCCCCTTCTTTGGCAAGATGGTTCAGAAAGTGGTTTCAGAAGAA GTAGAGAAAGCAATTTTCAGACAAGTCAGCACACCAGCGCCTCCAAGACTGCTAGCAGGA TTGAATCAGCAGCGTCCAAGGTATCAACTCGTGTTCCTGAATGAACTAAAGCCTGTTTAC ACACTGATGAAATTAGAAGCCAAGGATGGACCGGGTCTTAAGGTGGCTATAGTCGAAAGA CTCGAAAACAATCAGATGCGCATCGTCAGGTTCGGTCATCTTGCTTCTGCTAAGGTTGAA GTTGTAGTCCTCCACGGCAACTTTAATGCTAAAAATGAGGAACAATGGACCCCTGAAGAC TTCAGCAAGCAGATAGTATGCGGGCGAGAGAAAAGCGCACAACTTCTCACCGGAAATCTG ACACTGAAGCTCAATGGAGGGGAAGCATTACTTGAGAATGCAACCTTCACTGATAACTCT AGCTTCACTAGCACTAAGAAGTTCAGGCTGGGTTTGAGGCTAGCCAACAATTCTGAAGAT AGGGTTCTTGAAGGAATCACTGAACCTTTTCGTGTAAAGGAGCGTAGGGTGGAGGGATTT GAAAAGCACTACCCGCCAATGTTGGATGACGAAGTTTGGCGTTTGGAAAAGATCGGCCGC AATGGAGCTCACCACCAGGCCTTGACAAACAGTGGAGTTGATACTGTACAGAAGTTCTTA CAATCATATTTTACGGACGAAAAGAAGCTTTTTCAGACTTTTAGCAAGATGTCACAGGCA GCTTGGAAAACCATCATAAGCCATGCCATGACATGTGAAGTCGGTGACGATCTTTGCTTG TATGAAGTGAAGGGCAACAACGTGGGACTTTTCTTCGATGCAATATATCAGCTTGTTGGG GTGAAGTTTGGTGATTCTTACAAGCCCATAAATGAGCTCGACGAAATAGAGCAGAGTGCA GTTGAAACAATGAAGCAATTGGCTTATGCGAATATAAGTGGTATTCAGTATGACCATAAG ATGGTCAACAACTATCCTGTACCGCTTCATAGGTTCCATTGTGGGGGAACTTCTATGTTG ACTGACTTTATTCCTAAACAGCAGATCCCAACTTGTGGTCAATACAATTCAGCCCTGGCT GGTCAACCATTTGAATCAACGGAGAACTTTTCTTCATTCCAAGAAGCCTCTAATGCTTCA GTGGATATGTCAAGATTTGTGCAGGGTCAAACCTCCAACGTGCAGTTTAGCCAACAGTTG GGCATGGGCAATTTTATCCCACATCATTCAAATCAAGGAACATTCATACCCAGACCAAGA ATCACTCCTCTGTGTATACCTAATACCGAAAAAACATATTTTAATCCAAACGCTCATAGC AGCATCCAGGCTGATCATGCTGCCACACGAATTGGCCAGTATGCACATAATGAGCGATCT CATTCACCTGAAGAATCATACAAGCGCTTTTCTCCAGATAATTTCCTCCATACAGATGAA GTTGTGGCTTTGATGCAACCTCACTTAGTGCCTCCAAGCAACAGCGAGAATTTCAGTAAC CTGCTCAACCTATCAAGCAATGACCAAACCTCACAGCAAATTGCCGCTCCATTCCAGCCA TC

Peptide Sequence

PEP ID	Os12t0547600-02
PEP Infomation	pep chromosome:IRGSP-1.0:12:22133842:22136891:-1 gene:Os12g0547600 transcript:Os12t0547600-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Calmodulin-Binding Protein description:Calmodulin binding protein-like domain containing protein. (Os12t0547600-01);Hypothetical conserved gene. (Os12t0547600-02)
Sequence	MAPSTSLLSWSSSDDDDGAGAGGELSRPRRRWRALVLGLGVRRKRSMEGVFGFREMMGEE FMGMFLPFFGKMVQKVVSEEVEKAIFRQVSTPAPPRLLAGLNQQRPRYQLVFLNELKPVY TLMKLEAKDGPGLKVAIVERLENNQMRIVRFGHLASAKVEVVVLHGNFNAKNEEQWTPED FSKQIVCGREKSAQLLTGNLTLKLNGGEALLENATFTDNSSFTSTKKFRLGLRLANNSED RVLEGITEPFRVKERRVEGFEKHYPPMLDDEVWRLEKIGRNGAHHQALTNSGVDTVQKFL QSYFTDEKKLFQTFSKMSQAAWKTIISHAMTCEVGDDLCLYEVKGNNVGLFFDAIYQLVG VKFGDSYKPINELDEIEQSAVETMKQLAYANISGIQYDHKMVNNYPVPLHRFHCGGTSML TDFIPKQQIPTCGQYNSALAGQPFESTENFSSFQEASNASVDMSRFVQGQTSNVQFSQQL GMGNFIPHHSNQGTFIPRPRITPLCIPNTEKTYFNPNAHSSIQADHAATRIGQYAHNERS HSPEESYKRFSPDNFLHTDEVVALMQPHLVPPSNSENFSNLLNLSSNDQTSQQIAAPFQP

Transcript Sequence

Transcript ID	Os12t0547600-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:22133842:22136891:-1 gene:Os12g0547600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Calmodulin-Binding Protein description:Calmodulin binding protein-like domain containing protein. (Os12t0547600-01);Hypothetical conserved gene. (Os12t0547600-02)
Sequence	TTTCCTCCACCGATGGCTCCTTCCACGAGTCTCCTCTCCTGGTCCTCCTCCGACGACGAC GACGGCGCCGGCGCCGGCGGCGAGCTGTCCCGCCCTCGCAGGCGGTGGCGGGCGCTTGTC CTGGGGCTCGGGGTGAGGAGGAAGAGGAGCATGGAGGGGGTGTTCGGGTTCAGGGAGATG ATGGGGGAGGAGTTCATGGGCATGTTCCTCCCCTTCTTTGGCAAGATGGTTCAGAAAGTG GTTTCAGAAGAAGTAGAGAAAGCAATTTTCAGACAAGTCAGCACACCAGCGCCTCCAAGA CTGCTAGCAGGATTGAATCAGCAGCGTCCAAGGTATCAACTCGTGTTCCTGAATGAACTA AAGCCTGTTTACACACTGATGAAATTAGAAGCCAAGGATGGACCGGGTCTTAAGGTGGCT ATAGTCGAAAGACTCGAAAACAATCAGATGCGCATCGTCAGGTTCGGTCATCTTGCTTCT GCTAAGGTTGAAGTTGTAGTCCTCCACGGCAACTTTAATGCTAAAAATGAGGAACAATGG ACCCCTGAAGACTTCAGCAAGCAGATAGTATGCGGGCGAGAGAAAAGCGCACAACTTCTC ACCGGAAATCTGACACTGAAGCTCAATGGAGGGGAAGCATTACTTGAGAATGCAACCTTC ACTGATAACTCTAGCTTCACTAGCACTAAGAAGTTCAGGCTGGGTTTGAGGCTAGCCAAC AATTCTGAAGATAGGGTTCTTGAAGGAATCACTGAACCTTTTCGTGTAAAGGAGCGTAGG GTGGAGGGATTTGAAAAGCACTACCCGCCAATGTTGGATGACGAAGTTTGGCGTTTGGAA AAGATCGGCCGCAATGGAGCTCACCACCAGGCCTTGACAAACAGTGGAGTTGATACTGTA CAGAAGTTCTTACAATCATATTTTACGGACGAAAAGAAGCTTTTTCAGACTTTTAGCAAG ATGTCACAGGCAGCTTGGAAAACCATCATAAGCCATGCCATGACATGTGAAGTCGGTGAC GATCTTTGCTTGTATGAAGTGAAGGGCAACAACGTGGGACTTTTCTTCGATGCAATATAT CAGCTTGTTGGGGTGAAGTTTGGTGATTCTTACAAGCCCATAAATGAGCTCGACGAAATA GAGCAGAGTGCAGTTGAAACAATGAAGCAATTGGCTTATGCGAATATAAGTGGTATTCAG TATGACCATAAGATGGTCAACAACTATCCTGTACCGCTTCATAGGTTCCATTGTGGGGGA ACTTCTATGTTGACTGACTTTATTCCTAAACAGCAGATCCCAACTTGTGGTCAATACAAT TCAGCCCTGGCTGGTCAACCATTTGAATCAACGGAGAACTTTTCTTCATTCCAAGAAGCC TCTAATGCTTCAGTGGATATGTCAAGATTTGTGCAGGGTCAAACCTCCAACGTGCAGTTT AGCCAACAGTTGGGCATGGGCAATTTTATCCCACATCATTCAAATCAAGGAACATTCATA CCCAGACCAAGAATCACTCCTCTGTGTATACCTAATACCGAAAAAACATATTTTAATCCA AACGCTCATAGCAGCATCCAGGCTGATCATGCTGCCACACGAATTGGCCAGTATGCACAT AATGAGCGATCTCATTCACCTGAAGAATCATACAAGCGCTTTTCTCCAGATAATTTCCTC CATACAGATGAAGTTGTGGCTTTGATGCAACCTCACTTAGTGCCTCCAAGCAACAGCGAG AATTTCAGTAACCTGCTCAACCTATCAAGCAATGACCAAACCTCACAGCAAATTGCCGCT CCATTCCAGCCATC