Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0546800-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:22089434:22091864:1 gene:Os12g0546800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 26 description:Alpha expansin 26. (Os12t0546800-01)
Sequence

ATGGACACAACGACGACCATGGCGCCTCTCCCTCTCCTCACCACGACGTCTCTGCTGCTC
TTCTTCTTCCTCGCGTCGTCGTTCGCCGCCGACGTCGTCGTCGCGGGCGGCGGCGGCGGC
GGCGGCGGCTACGACGGCGGCGGCGACGGCGAAGGCGGCGGCGGCGGCGACGGCGAAGGC
GGCGGCGGCGGCGGCGGAGCCAAGATGCCGCACGTGAACCACGGCAGGTACAAGTGCGGG
CCGTGGGTGGACGGGCACGCGACGTTCTACGGCGGGCGCGACGCGTCGGGCACGACGGAG
GGCGGCGCGTGCGGGTACAAGGACGCCGACGGGTACGGCGCGATGACGGCGGCGGTGAGC
CCCGCCCTGTTCGACAACGGCGCCGGGTGCGGCGCGTGCTACGAGCTCAAGGGGGATTCC
GGGAAGACCGTCGTGGTGACGGCCACCAACCAGGCGCCGCCGCCAGTGAACGGGATGAAG
GGCGAGCACTTCGACCTCACCATGCCGGCGTTCCTCTCCATCGCCGAGGAGAAGCTCGGC
GTCGTGCCCGTCTCCTACCGAAAGGTGGCGTGCGTGAGGCAGGGCGGGATAAAGTACACG
ATAACGGGGAACCCGTCGTACAACATGGTGATGGTGAAGAACGTGGGCGGCGCGGGGGAC
GTGGTGAAGCTGACGGTGAAGGGGACCAAGCGGGTGAAGTGGACGCCGCTGCAGCGCAGC
TGGGGCCAGCTCTGGAAGACGGAGGCCAACCTCACCGGCGAGTCGCTCACCTTCCGGGTC
ATGACCGGCGACCACCGCAAGGCCACCTCCTGGCGCGTCGCCCCCCGCGACTGGACCTAC
GACAACACCTACCAGGCCAAGAAGAACTTCTAG

Peptide Sequence

PEP ID

Os12t0546800-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:22089434:22091864:1 gene:Os12g0546800 transcript:Os12t0546800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 26 description:Alpha expansin 26. (Os12t0546800-01)
Sequence

MDTTTTMAPLPLLTTTSLLLFFFLASSFAADVVVAGGGGGGGGYDGGGDGEGGGGGDGEG
GGGGGGAKMPHVNHGRYKCGPWVDGHATFYGGRDASGTTEGGACGYKDADGYGAMTAAVS
PALFDNGAGCGACYELKGDSGKTVVVTATNQAPPPVNGMKGEHFDLTMPAFLSIAEEKLG
VVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRS
WGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTYQAKKNF

Transcript Sequence

Transcript ID

Os12t0546800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22089434:22091864:1 gene:Os12g0546800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 26 description:Alpha expansin 26. (Os12t0546800-01)
Sequence

TCTCCGGTTAATTTCATGGACACAACGACGACCATGGCGCCTCTCCCTCTCCTCACCACG
ACGTCTCTGCTGCTCTTCTTCTTCCTCGCGTCGTCGTTCGCCGCCGACGTCGTCGTCGCG
GGCGGCGGCGGCGGCGGCGGCGGCTACGACGGCGGCGGCGACGGCGAAGGCGGCGGCGGC
GGCGACGGCGAAGGCGGCGGCGGCGGCGGCGGAGCCAAGATGCCGCACGTGAACCACGGC
AGGTACAAGTGCGGGCCGTGGGTGGACGGGCACGCGACGTTCTACGGCGGGCGCGACGCG
TCGGGCACGACGGAGGGCGGCGCGTGCGGGTACAAGGACGCCGACGGGTACGGCGCGATG
ACGGCGGCGGTGAGCCCCGCCCTGTTCGACAACGGCGCCGGGTGCGGCGCGTGCTACGAG
CTCAAGGGGGATTCCGGGAAGACCGTCGTGGTGACGGCCACCAACCAGGCGCCGCCGCCA
GTGAACGGGATGAAGGGCGAGCACTTCGACCTCACCATGCCGGCGTTCCTCTCCATCGCC
GAGGAGAAGCTCGGCGTCGTGCCCGTCTCCTACCGAAAGGTGGCGTGCGTGAGGCAGGGC
GGGATAAAGTACACGATAACGGGGAACCCGTCGTACAACATGGTGATGGTGAAGAACGTG
GGCGGCGCGGGGGACGTGGTGAAGCTGACGGTGAAGGGGACCAAGCGGGTGAAGTGGACG
CCGCTGCAGCGCAGCTGGGGCCAGCTCTGGAAGACGGAGGCCAACCTCACCGGCGAGTCG
CTCACCTTCCGGGTCATGACCGGCGACCACCGCAAGGCCACCTCCTGGCGCGTCGCCCCC
CGCGACTGGACCTACGACAACACCTACCAGGCCAAGAAGAACTTCTAGCTGATCGATTTT
TTTCAACTTATTTACTTATAATATTTTTACCTCTCCCTCCGTTCTCTCCCTACTTAATTG
ATGAATTTTTGGAAGTGAAAACTAATTAACACTGAATTTTTTTCTTACGAATTAATCCTC
TGCGTATTTACTAATTTGAGTTTGAAAGAATTCGTTGATAGTGATATTTGATGGATATTC
ATGTAAGCTTTGGAATCTTAAATTTTGATGTACTGGTCGAAAATGCCATTAGCATTGCAT
TTATTCTGTTTTTATTATTATTATTTTGGCT