Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0545400-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:22010334:22012262:1 gene:Os12g0545400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0545400-00)
Sequence

ATGCCGTTACTAATCCATCCTCATTTCTCTCGCAAATCTCCATCGTCGGCGGCGGCGCGG
CGGTCGAGGTCGACGTCACGAGAGATGGCGGCGGCGGCGGCTGGGGTCACGTGCCACCTC
TGCCGCGAACACCAGATGGAGATGGAATGCTGCCGCGGGGGCCTGCTGCCGCGCGGCTCC
ACCACCGCGCTCCCCGACGCCGCCGGCGGTGAGGCGGAGGAGGAGGAGGAAGACCGCCTC
AGCGCCCTCCCCGACGACATCCTCCTCCCGATCCTCGCGGCCCTCCGCTGCGCCCGCGCC
GCCGCGCACACCTCCGTCCTCGCGCGCCGGTGGCGCGGCCTCTGGGCCCGCCTCCCCGTC
CTCACGTTCCACCGCGTCGCCCCCGCCCCGCTCCACGCCGCGCTCGCCACGGTCGCCGCC
GCCGGCGGCGCCGCCCCCGCGCTCCTCGACATCGACCTCTTCAGCCACCACGACCTCGAC
CCGGCCTCGCTGCTCGCGGCCGCCGCGGCGGTGGCGCCGGGAGAGCTCGTCGTGAACGCC
AGCTGGTCCGCGCGAAGCACCGAGCTGCCATGCTTCGACCGCACCGCCTCGATCAAGATC
GACGTCCACTTCGCCGGCTTCACGCTGCCGCCCGCCGGAGTCTTCCCGGCGCTCGAAACC
CTCCACCTCGAGAACTGCTTCGTCGACCTCGGCGACATGATCCCGCGCTGCCCGCGCCTC
CGCAAGCTCTCCATCCCGTTCTGGAACGCCACCGCGGTCACCGTCCGCTCGCCGTCGCTC
GAGGAGATGGAGGTGTATGCCAATTTCAAGATCACCATCGACATCGTCGCGCCCGCGCTG
AAGAGGCTGTATCTGGATGCACGTCGCGGGATCAACACGGATGCCGGCGGATTTACGCTC
TCGGCGCCATCGGTGGAGGATCTGACATGGAACTGCGAGTGCCAGGCCGTGAGCGATAGT
TTTGGTGTGAGATGGCGCATGTGGAGCTTGAGCTTTAGCTCATCATGTCTTGACCCCCAT
GGGATTATGCAGATGCAGCAGATGGACAACAACGGCGAAGCCGAAACCGCGCATTCGCTG
TCATTGTCGTCGTCGTCGCAGCGACGCCCTCGAGCTTTGAGCAAGAGATATTCCGGTTTC
AAGTTACGGACAACTTTTCTGTTTTGGAGCTGGATCTGA

Peptide Sequence

PEP ID

Os12t0545400-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:22010334:22012262:1 gene:Os12g0545400 transcript:Os12t0545400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0545400-00)
Sequence

MPLLIHPHFSRKSPSSAAARRSRSTSREMAAAAAGVTCHLCREHQMEMECCRGGLLPRGS
TTALPDAAGGEAEEEEEDRLSALPDDILLPILAALRCARAAAHTSVLARRWRGLWARLPV
LTFHRVAPAPLHAALATVAAAGGAAPALLDIDLFSHHDLDPASLLAAAAAVAPGELVVNA
SWSARSTELPCFDRTASIKIDVHFAGFTLPPAGVFPALETLHLENCFVDLGDMIPRCPRL
RKLSIPFWNATAVTVRSPSLEEMEVYANFKITIDIVAPALKRLYLDARRGINTDAGGFTL
SAPSVEDLTWNCECQAVSDSFGVRWRMWSLSFSSSCLDPHGIMQMQQMDNNGEAETAHSL
SLSSSSQRRPRALSKRYSGFKLRTTFLFWSWI

Transcript Sequence

Transcript ID

Os12t0545400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:22010334:22012262:1 gene:Os12g0545400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0545400-00)
Sequence

ATGCCGTTACTAATCCATCCTCATTTCTCTCGCAAATCTCCATCGTCGGCGGCGGCGCGG
CGGTCGAGGTCGACGTCACGAGAGATGGCGGCGGCGGCGGCTGGGGTCACGTGCCACCTC
TGCCGCGAACACCAGATGGAGATGGAATGCTGCCGCGGGGGCCTGCTGCCGCGCGGCTCC
ACCACCGCGCTCCCCGACGCCGCCGGCGGTGAGGCGGAGGAGGAGGAGGAAGACCGCCTC
AGCGCCCTCCCCGACGACATCCTCCTCCCGATCCTCGCGGCCCTCCGCTGCGCCCGCGCC
GCCGCGCACACCTCCGTCCTCGCGCGCCGGTGGCGCGGCCTCTGGGCCCGCCTCCCCGTC
CTCACGTTCCACCGCGTCGCCCCCGCCCCGCTCCACGCCGCGCTCGCCACGGTCGCCGCC
GCCGGCGGCGCCGCCCCCGCGCTCCTCGACATCGACCTCTTCAGCCACCACGACCTCGAC
CCGGCCTCGCTGCTCGCGGCCGCCGCGGCGGTGGCGCCGGGAGAGCTCGTCGTGAACGCC
AGCTGGTCCGCGCGAAGCACCGAGCTGCCATGCTTCGACCGCACCGCCTCGATCAAGATC
GACGTCCACTTCGCCGGCTTCACGCTGCCGCCCGCCGGAGTCTTCCCGGCGCTCGAAACC
CTCCACCTCGAGAACTGCTTCGTCGACCTCGGCGACATGATCCCGCGCTGCCCGCGCCTC
CGCAAGCTCTCCATCCCGTTCTGGAACGCCACCGCGGTCACCGTCCGCTCGCCGTCGCTC
GAGGAGATGGAGGTGTATGCCAATTTCAAGATCACCATCGACATCGTCGCGCCCGCGCTG
AAGAGGCTGTATCTGGATGCACGTCGCGGGATCAACACGGATGCCGGCGGATTTACGCTC
TCGGCGCCATCGGTGGAGGATCTGACATGGAACTGCGAGTGCCAGGCCGTGAGCGATAGT
TTTGGTGTGAGATGGCGCATGTGGAGCTTGAGCTTTAGCTCATCATGTCTTGACCCCCAT
GGGATTATGCAGATGCAGCAGATGGACAACAACGGCGAAGCCGAAACCGCGCATTCGCTG
TCATTGTCGTCGTCGTCGCAGCGACGCCCTCGAGCTTTGAGCAAGAGATATTCCGGTTTC
AAGTTACGGACAACTTTTCTGTTTTGGAGCTGGATCTGAAGGCACAAGGGCATGTCTATG
GGGCAATCGTCCTGCACCTACTTGGCATTTGTACCTCTACACAAAGGCTTAGGGTGTTGC
TAGATGAATTTCTGTCGCAGGACTCATGCTTTGTAAGTTGCCGTTGCGACCAGCCCAATA
ACTGGAGAAATCAAAGTATCTCCTTGACTGATCTTAAAGAAGTAGAAATCAGAGGCTTCA
GAGGACAAAACCATGAAGTTGATTTGTTGAAGGTGCTCCTGAGATGCGCAACCGTGCTCG
AAAGAGTGACCGTCAGATTTTCCAGGAAGGTTACACCGAGTGATTGTCGATGCAGGGAAC
TCAGTGGCATTTTAGAGGCCTATCCTTCTGTGAAATGCAGTGTTTATTATCTCCAATCTG
GCAAGCAGGTTTTCATATGCAGGCAGCAATAGGATGCTAGCTCTTGGATGTAACAGTGGT
ATTCGCTTTAGCACAATATTGTCCAAACTAGAAGTT