Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0541500-02
CDS Infomation	cds chromosome:IRGSP-1.0:12:21660671:21666265:1 gene:Os12g0541500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Elongation factor Ts. (Os12t0541500-01);Similar to Chloroplast polyprotein of elongation factor Ts. (Os12t0541500-02);Similar to Elongation factor Ts. (Os12t0541500-03);Similar to Elongation factor Ts. (Os12t0541500-04);Similar to Elongation factor Ts. (Os12t0541500-05)
Sequence	ATGACCCCGGTGGTTCATTGCTCTGTTGGCAATATCAGCCTGTTCCACATCGGCAGTTTC AGGCCAAGCCATGAAATCCAAATAAGGAGGTTCCGCAGCACAGAGAGGTATTCAAGAGTA CCTTCACGTAGGCTGCTGCAACCGCAACGAGCATTCAACTTGATCAGTATTTACAAGAGA AGCAGCTGGTCCTCTGCCCGCAGGCCAAGAACTCTGTCAGCAGCAACTGTTGGGACTGAT GTTACTGTAGAGGATCCGAATCCACCACCTTCCGGAGAAACTTCTGAAGAAAGCTCTGAG GATACAGCACCTGACACTGCTGAAGCAAGTGAGCAAGCTGAGGCAAGCACTTCTTCCATT CCCAAAGCAGGACGAAACATAAGAAAGAGTGAGATGCCACCACTGAATGATGAGGATCTA GTTCCTGGTGCATCTTTTACTGGGAAGGTTAGGTCTATCAAACCATTTGGTGTATTTGTT GATATTGGAGCATTCACTGAAGGCCTTGTTCATATCTCTCGAGTAAGTGATGGATTTGTA AAAGATATATCTTCCCTCTTCACTGTCGGGCAAGAGGTGTCAGTGAGATTAGTGGAAGCA AATAAAGAGACAGGGCGCATCTCATTGACAATGCGAACAGGTGGTGATTATGTCAAGCCT AAAACAGAAACACCTAAGGCTGCAAGTGGCGGGAGGAATACCACTGCAACCACGTCCAGA GGCTCGCCAAGGCAAACGAGGGAAAGAGATGAAGCCAAGAGCATGGGCGAAACAAACTAT GTGCAAGGACAATTTCTGGATGGCGTTGTGAAAAATTCAACAAGAGCAGGGTCATTTGTG ACCCTACCTGATGGAAGCGAAGGATTCCTTCCCAGAGAAGAGGAGGCAGTGGCATTGTTC ACCCTTATCGGACATTCTGCACTGGAAGTTGGTCAACAGGTAAGGGTGAAAGTATTGAAC GTAGTACGAGGCCAGGTCACGTTGACAATGAAGGAGGGAGAAGATGATGAAGAGGATCTG GCTTCATTAAACACACAGCTGAAGCAGGGTTGGTCCAGAGGGACCAATGCATTTGAGCTA GCTTTCCGTAGGAATAAGGAAATCTCTGCATTTTTGGATCAGAGGGAAAAGATAATAGTT CCAGATGTACAAGAAGCTGCTGTTGCATCAGTAGGTACTGAACTTGATGCAGAAGTAGGA ATTGAGCAAAGTCCAGGCAAGGAACCTGAGACAGGCAATGCTGAATCAGTTGCAATCGAT AGTTCTATAACGGAGGTCAAGGAGACTGATAGTATAGCTGCAGTGGAGAAGGATAGCGAA ATTAGCAAGACTGAATCAGTTGAGACTGCTAGTTCAGTTGTAATTTCTGAAGATGATAGC ACAGTTGATGGCAAACTCGTTGAACCAACTGCTTCAGTTTCTGCAACTGAAACTGAGATT AAAGAAGATAGCTCTGAGGGATCTGTCACCACTGAGCCTACAGAAGCTGCTTCAACAGAA TTTGTCACCGCAGTCGTTGAGGAAAGCGCTCCGACTGCTAGTTCAGTTGAAACTTCTGAA GATGATAGCACAGTTGATGACAAACTCGTTGAGCCTACTGCTTCAGTTTCTGCAACTGAA GCTGAGAGCAAAGAAGATAGCTCTGAGGGATCTGTTGCTTCAACAGAATCTGTCACCGCA GTCGTTGAGGAAAGCGCTCCTGTGTCATCAGTAGCAATTGAAGTTCCTGCTCCTGAAGCA TCAGAGGCCTCCGCTCAGGAGATAATTGAGGATTCTACTACTGTGGAAGGTGCCGCCGAT GATCAAACTGTAGAATCTGATAGTCCACCTCCAGAAGGTGTTGAGCTGTCCTCGAATGGG GCTCCAGACAGCTCTATTGCTGAGGATAAGCCTGATGAACCAGAAGAATCGTTGATAGTA GAAGAGGTTCCAGTAACTGCAAGTAGTGAGTCTGAGGATAAAGAACCTGCTGCGGTACCT GAAGAAGTAGCAGCCTCAAGTGAGAAAACTGCAGATGTTGCTGTTGCAGGAGCTGAAGCA AGCACGGCCACAGCAACTATTTCTCCTGCTCTTGTCAAGCAATTGCGTGAAGCAACTGGA GCAGGCATGATGGACTGTAAGAAGGCTCTTGCAGAATCAGGGGGTGACATTGAGAAAGCA CAAGAATTCCTCCGCAAAAAAGGTTTGGCGGCTGCTGACAAGAGGGCTGGCAGGGCCACT GCAGAGGGAAGAATTGGTTCTTACATACATGACAGCAGAATCGGTGTTCTTATTGAAGTG AATTGCGAGACTGACTTTGTATCCCGAGGTGACATCTTCAAAGAGTTGGTAGACGATCTA GCCATGCAAGTCGCCGCTTGCCCTCAAGTACAGTACATTTCTCTTGATGACGTCCCTGAG GAGGTTATGAAGAAGGAGACAGAGCTGGAGATGCAGAGGGAGGACCTCTTGTCAAAGCCA GAGCAGATCCGGTCTAAGATTGTAGAGGGCCGTGTAAAGAAGAGGCTTGGAGAATATGCA TTGCTGGAGCAACCCTTCATCAAGAATGACAAGGTCACAATCAGTGAATGGGTGAAGCAA ACTATTGCCACAATTGGAGAGAACATGAAGGTCAACAGATTTGTCCGGTACAATCTCGGT GAAGGGTTGGAGAAGAGAAGCCAGGATTTTGCTGCTGAAGTTGCCGCCCAGACAGCCGCG AAGGCACCGCCAGCTGCTCCTCCAAAGGATGATAAGCCTGAGGAAACAGCAGAAACTGAA GAGAAGAAACCAGCTGTGGCAATTTCAGCTGCATTGGTAAAGCAACTCCGAGACGAAACT GGTGCTGGTATGATGGACTGCAAGAAAGCACTAGCTGAGACAGGCGGCGACATTCAGCAG GCTCAGGAGTTCCTCAGGAAGAAGGGCCTGTCATCTGCAGACAAGAAGTCCTCTCGCCTA ACCGCCGAAGGCCTAATTGGCGCCTACATCCATGACAATCGGATTGGTTGCATGATTGAG ATCAATTCCGAGACCGACTTCGTGGCTCGCAACGAGAAGTTCAAGGAGCTGGTGAACGAC CTCGCGATGCAGGTGGTGGCATGTCCACAGGTTGAGTATGTCTCCATAGAGGACATCCCA GAGAGTGTTGTCATCAAGGAGAAAGAGATTGAGATGCAGAGAGAGGACCTTCAGTCCAAA CCTGAGAACATCAGGGAGAAGATCGTCGAAGGCCGGATATCGAAGAGGCTCGGCGTGCTG GCCCTCCTGGAGCAGCCTTTCATCAAGGATGACAGCAAGACGGTGAAGGATCTTGTGAAG GAGACGATCGCCACCCTTGGGGAGAACATCAAGGTACGGAGGTTCACCCGGTACACCCTT GGTGAGAACTGA

Peptide Sequence

PEP ID	Os12t0541500-02
PEP Infomation	pep chromosome:IRGSP-1.0:12:21660671:21666265:1 gene:Os12g0541500 transcript:Os12t0541500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Elongation factor Ts. (Os12t0541500-01);Similar to Chloroplast polyprotein of elongation factor Ts. (Os12t0541500-02);Similar to Elongation factor Ts. (Os12t0541500-03);Similar to Elongation factor Ts. (Os12t0541500-04);Similar to Elongation factor Ts. (Os12t0541500-05)
Sequence	MTPVVHCSVGNISLFHIGSFRPSHEIQIRRFRSTERYSRVPSRRLLQPQRAFNLISIYKR SSWSSARRPRTLSAATVGTDVTVEDPNPPPSGETSEESSEDTAPDTAEASEQAEASTSSI PKAGRNIRKSEMPPLNDEDLVPGASFTGKVRSIKPFGVFVDIGAFTEGLVHISRVSDGFV KDISSLFTVGQEVSVRLVEANKETGRISLTMRTGGDYVKPKTETPKAASGGRNTTATTSR GSPRQTRERDEAKSMGETNYVQGQFLDGVVKNSTRAGSFVTLPDGSEGFLPREEEAVALF TLIGHSALEVGQQVRVKVLNVVRGQVTLTMKEGEDDEEDLASLNTQLKQGWSRGTNAFEL AFRRNKEISAFLDQREKIIVPDVQEAAVASVGTELDAEVGIEQSPGKEPETGNAESVAID SSITEVKETDSIAAVEKDSEISKTESVETASSVVISEDDSTVDGKLVEPTASVSATETEI KEDSSEGSVTTEPTEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTASVSATE AESKEDSSEGSVASTESVTAVVEESAPVSSVAIEVPAPEASEASAQEIIEDSTTVEGAAD DQTVESDSPPPEGVELSSNGAPDSSIAEDKPDEPEESLIVEEVPVTASSESEDKEPAAVP EEVAASSEKTADVAVAGAEASTATATISPALVKQLREATGAGMMDCKKALAESGGDIEKA QEFLRKKGLAAADKRAGRATAEGRIGSYIHDSRIGVLIEVNCETDFVSRGDIFKELVDDL AMQVAACPQVQYISLDDVPEEVMKKETELEMQREDLLSKPEQIRSKIVEGRVKKRLGEYA LLEQPFIKNDKVTISEWVKQTIATIGENMKVNRFVRYNLGEGLEKRSQDFAAEVAAQTAA KAPPAAPPKDDKPEETAETEEKKPAVAISAALVKQLRDETGAGMMDCKKALAETGGDIQQ AQEFLRKKGLSSADKKSSRLTAEGLIGAYIHDNRIGCMIEINSETDFVARNEKFKELVND LAMQVVACPQVEYVSIEDIPESVVIKEKEIEMQREDLQSKPENIREKIVEGRISKRLGVL ALLEQPFIKDDSKTVKDLVKETIATLGENIKVRRFTRYTLGEN

Transcript Sequence

Transcript ID	Os12t0541500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:21660671:21666265:1 gene:Os12g0541500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Elongation factor Ts. (Os12t0541500-01);Similar to Chloroplast polyprotein of elongation factor Ts. (Os12t0541500-02);Similar to Elongation factor Ts. (Os12t0541500-03);Similar to Elongation factor Ts. (Os12t0541500-04);Similar to Elongation factor Ts. (Os12t0541500-05)
Sequence	ATGGCCTCTCCCTCCCTCCTAACCCGTTTCCTTCCAGATAAGGCTATATAAATACCCATC ATCTCCTTCCTCTCTTCCTCGCTCTCCCCACCCCTCTCGGCCTCTCCTCGGTGGTCGACG GCTTCACCGGACCGGACCGGACCACCGCTCGCCGCCGGGCACCCCCGCGCCGCGGTCTGT ATGTCAAAGGGTACAGAAACAATCAATATTCTGATATAGTTGCTGGGAATTTCAATCCCT AAATTCAAAATGACCCCGGTGGTTCATTGCTCTGTTGGCAATATCAGCCTGTTCCACATC GGCAGTTTCAGGCCAAGCCATGAAATCCAAATAAGGAGGTTCCGCAGCACAGAGAGGTAT TCAAGAGTACCTTCACGTAGGCTGCTGCAACCGCAACGAGCATTCAACTTGATCAGTATT TACAAGAGAAGCAGCTGGTCCTCTGCCCGCAGGCCAAGAACTCTGTCAGCAGCAACTGTT GGGACTGATGTTACTGTAGAGGATCCGAATCCACCACCTTCCGGAGAAACTTCTGAAGAA AGCTCTGAGGATACAGCACCTGACACTGCTGAAGCAAGTGAGCAAGCTGAGGCAAGCACT TCTTCCATTCCCAAAGCAGGACGAAACATAAGAAAGAGTGAGATGCCACCACTGAATGAT GAGGATCTAGTTCCTGGTGCATCTTTTACTGGGAAGGTTAGGTCTATCAAACCATTTGGT GTATTTGTTGATATTGGAGCATTCACTGAAGGCCTTGTTCATATCTCTCGAGTAAGTGAT GGATTTGTAAAAGATATATCTTCCCTCTTCACTGTCGGGCAAGAGGTGTCAGTGAGATTA GTGGAAGCAAATAAAGAGACAGGGCGCATCTCATTGACAATGCGAACAGGTGGTGATTAT GTCAAGCCTAAAACAGAAACACCTAAGGCTGCAAGTGGCGGGAGGAATACCACTGCAACC ACGTCCAGAGGCTCGCCAAGGCAAACGAGGGAAAGAGATGAAGCCAAGAGCATGGGCGAA ACAAACTATGTGCAAGGACAATTTCTGGATGGCGTTGTGAAAAATTCAACAAGAGCAGGG TCATTTGTGACCCTACCTGATGGAAGCGAAGGATTCCTTCCCAGAGAAGAGGAGGCAGTG GCATTGTTCACCCTTATCGGACATTCTGCACTGGAAGTTGGTCAACAGGTAAGGGTGAAA GTATTGAACGTAGTACGAGGCCAGGTCACGTTGACAATGAAGGAGGGAGAAGATGATGAA GAGGATCTGGCTTCATTAAACACACAGCTGAAGCAGGGTTGGTCCAGAGGGACCAATGCA TTTGAGCTAGCTTTCCGTAGGAATAAGGAAATCTCTGCATTTTTGGATCAGAGGGAAAAG ATAATAGTTCCAGATGTACAAGAAGCTGCTGTTGCATCAGTAGGTACTGAACTTGATGCA GAAGTAGGAATTGAGCAAAGTCCAGGCAAGGAACCTGAGACAGGCAATGCTGAATCAGTT GCAATCGATAGTTCTATAACGGAGGTCAAGGAGACTGATAGTATAGCTGCAGTGGAGAAG GATAGCGAAATTAGCAAGACTGAATCAGTTGAGACTGCTAGTTCAGTTGTAATTTCTGAA GATGATAGCACAGTTGATGGCAAACTCGTTGAACCAACTGCTTCAGTTTCTGCAACTGAA ACTGAGATTAAAGAAGATAGCTCTGAGGGATCTGTCACCACTGAGCCTACAGAAGCTGCT TCAACAGAATTTGTCACCGCAGTCGTTGAGGAAAGCGCTCCGACTGCTAGTTCAGTTGAA ACTTCTGAAGATGATAGCACAGTTGATGACAAACTCGTTGAGCCTACTGCTTCAGTTTCT GCAACTGAAGCTGAGAGCAAAGAAGATAGCTCTGAGGGATCTGTTGCTTCAACAGAATCT GTCACCGCAGTCGTTGAGGAAAGCGCTCCTGTGTCATCAGTAGCAATTGAAGTTCCTGCT CCTGAAGCATCAGAGGCCTCCGCTCAGGAGATAATTGAGGATTCTACTACTGTGGAAGGT GCCGCCGATGATCAAACTGTAGAATCTGATAGTCCACCTCCAGAAGGTGTTGAGCTGTCC TCGAATGGGGCTCCAGACAGCTCTATTGCTGAGGATAAGCCTGATGAACCAGAAGAATCG TTGATAGTAGAAGAGGTTCCAGTAACTGCAAGTAGTGAGTCTGAGGATAAAGAACCTGCT GCGGTACCTGAAGAAGTAGCAGCCTCAAGTGAGAAAACTGCAGATGTTGCTGTTGCAGGA GCTGAAGCAAGCACGGCCACAGCAACTATTTCTCCTGCTCTTGTCAAGCAATTGCGTGAA GCAACTGGAGCAGGCATGATGGACTGTAAGAAGGCTCTTGCAGAATCAGGGGGTGACATT GAGAAAGCACAAGAATTCCTCCGCAAAAAAGGTTTGGCGGCTGCTGACAAGAGGGCTGGC AGGGCCACTGCAGAGGGAAGAATTGGTTCTTACATACATGACAGCAGAATCGGTGTTCTT ATTGAAGTGAATTGCGAGACTGACTTTGTATCCCGAGGTGACATCTTCAAAGAGTTGGTA GACGATCTAGCCATGCAAGTCGCCGCTTGCCCTCAAGTACAGTACATTTCTCTTGATGAC GTCCCTGAGGAGGTTATGAAGAAGGAGACAGAGCTGGAGATGCAGAGGGAGGACCTCTTG TCAAAGCCAGAGCAGATCCGGTCTAAGATTGTAGAGGGCCGTGTAAAGAAGAGGCTTGGA GAATATGCATTGCTGGAGCAACCCTTCATCAAGAATGACAAGGTCACAATCAGTGAATGG GTGAAGCAAACTATTGCCACAATTGGAGAGAACATGAAGGTCAACAGATTTGTCCGGTAC AATCTCGGTGAAGGGTTGGAGAAGAGAAGCCAGGATTTTGCTGCTGAAGTTGCCGCCCAG ACAGCCGCGAAGGCACCGCCAGCTGCTCCTCCAAAGGATGATAAGCCTGAGGAAACAGCA GAAACTGAAGAGAAGAAACCAGCTGTGGCAATTTCAGCTGCATTGGTAAAGCAACTCCGA GACGAAACTGGTGCTGGTATGATGGACTGCAAGAAAGCACTAGCTGAGACAGGCGGCGAC ATTCAGCAGGCTCAGGAGTTCCTCAGGAAGAAGGGCCTGTCATCTGCAGACAAGAAGTCC TCTCGCCTAACCGCCGAAGGCCTAATTGGCGCCTACATCCATGACAATCGGATTGGTTGC ATGATTGAGATCAATTCCGAGACCGACTTCGTGGCTCGCAACGAGAAGTTCAAGGAGCTG GTGAACGACCTCGCGATGCAGGTGGTGGCATGTCCACAGGTTGAGTATGTCTCCATAGAG GACATCCCAGAGAGTGTTGTCATCAAGGAGAAAGAGATTGAGATGCAGAGAGAGGACCTT CAGTCCAAACCTGAGAACATCAGGGAGAAGATCGTCGAAGGCCGGATATCGAAGAGGCTC GGCGTGCTGGCCCTCCTGGAGCAGCCTTTCATCAAGGATGACAGCAAGACGGTGAAGGAT CTTGTGAAGGAGACGATCGCCACCCTTGGGGAGAACATCAAGGTACGGAGGTTCACCCGG TACACCCTTGGTGAGAACTGATTGAGGAGGTGATCTCTAGTCTCAATCCTGACATCAGGA GTTGGGCATATTTTGATTCATGGAAGTTCATAGCTGTTGGTAGTATGATAAGTTTCCATC TGTAATTCTGTATCACCTGTTATATTGCTGCCCCTTTTTTTCAGCTGCTGTTATTACTGT TGCTGGTTACAGAACACATTTTTGAGCACTCCTTTGTAGATGACAAGAGAGATCAATATT GTCAATATAAACATTACGGC