Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0541400-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:21655012:21659199:1 gene:Os12g0541400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0541400-01);Conserved hypothetical protein. (Os12t0541400-02)
Sequence

ATGTCCGAGCCCGCGTCGCCCCCACCGGCCATGCCCGAGGACGCCGCGCCGCCGCAGCCG
CAGCCGGAGCCGGCGGTTCCAGCGGGGGAGGAGGCCGCCCCGTCTCTGGAGAGGAAGGAG
GAGTTGCTGCCGGTGGAGGAGAAGATCTCGGAATTAGATGAATCACAGTCACAGCTTATG
GGGAGACTTCGGGGACTCAAGGAGGATTTGCTGAATTGGAGGAGCAGTTTAGATACACAA
GTGACAAAATACAAAAGCGAACTCTCTGATATCAAAACTGCGCTGAATAGCGAAATTGAA
CAGCTGAGATCAGATTTTCAAGAATTGAGGACCACCCTTAAGAAGCAGCAGGAAGATGTA
TCAAATAGTTTGAAGAATTTGGGGCTACAAGATGCTACTGACAATGATGGGAACAAAGGA
AGTGGTGAGGAGAATGCAAGTGAGGGTGTCTCAGATACCCTAGGGAACCTGAAATTGGAT
GATACTCCAAAAAACCATGATGAAAGCAGTGATGCCAATGATGAAAAGAATGAAACCATT
GCTGAAGATGGCACGGTCGATAAAACTGTTAAGGCTGAGAGTGCAAGTGATGAATGA

Peptide Sequence

PEP ID

Os12t0541400-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:21655012:21659199:1 gene:Os12g0541400 transcript:Os12t0541400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0541400-01);Conserved hypothetical protein. (Os12t0541400-02)
Sequence

MSEPASPPPAMPEDAAPPQPQPEPAVPAGEEAAPSLERKEELLPVEEKISELDESQSQLM
GRLRGLKEDLLNWRSSLDTQVTKYKSELSDIKTALNSEIEQLRSDFQELRTTLKKQQEDV
SNSLKNLGLQDATDNDGNKGSGEENASEGVSDTLGNLKLDDTPKNHDESSDANDEKNETI
AEDGTVDKTVKAESASDE

Transcript Sequence

Transcript ID

Os12t0541400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:21655012:21659199:1 gene:Os12g0541400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0541400-01);Conserved hypothetical protein. (Os12t0541400-02)
Sequence

ACCCACCCACGCGCCGCGCCCTAACCCTAACCCTAACCCTAACCCTACTCCTCTCGCTCG
CCATGTCCGAGCCCGCGTCGCCCCCACCGGCCATGCCCGAGGACGCCGCGCCGCCGCAGC
CGCAGCCGGAGCCGGCGGTTCCAGCGGGGGAGGAGGCCGCCCCGTCTCTGGAGAGGAAGG
AGGAGTTGCTGCCGGTGGAGGAGAAGATCTCGGAATTAGATGAATCACAGTCACAGCTTA
TGGGGAGACTTCGGGGACTCAAGGAGGATTTGCTGAATTGGAGGAGCAGTTTAGATACAC
AAGTGACAAAATACAAAAGCGAACTCTCTGATATCAAAACTGCGCTGAATAGCGAAATTG
AACAGCTGAGATCAGATTTTCAAGAATTGAGGACCACCCTTAAGAAGCAGCAGGAAGATG
TATCAAATAGTTTGAAGAATTTGGGGCTACAAGATGCTACTGACAATGATGGGAACAAAG
GAAGTGGTGAGGAGAATGCAAGTGAGGGTGTCTCAGATACCCTAGGGAACCTGAAATTGG
ATGATACTCCAAAAAACCATGATGAAAGCAGTGATGCCAATGATGAAAAGAATGAAACCA
TTGCTGAAGATGGCACGGTCGATAAAACTGTTAAGGCTGAGAGTGCAAGTGATGAATGAA
GTAGCGGAGGAACCAGAAGTAGAACTTGGGCCGCTTCTTTTTCGTGGCTCAGCTGTAGTA
ATTTTTAGAACAGAGATAACTTTGGTTCCTGAAACGAGTCCACGCTCTCTGATGGCTTCG
TCGTGTAGTGTTGTTAATCGCTGTCATGACTTGTGAAATCCCAGTTCTCTGGAATGGCCG
TAGTAACAATTTTATTGCTATCAGCAAGTTATCTAAAGAATAGCCACTGGAATTTTGCCT
TTAAAAATTCCAGATATTTTTCTCAAATCAGTTATCTATGTGATGCCAGCCATTTTAAGG
CGGAAGAATGATGGGTTTTTTTTTTTTTGGTAGGCCATGGTTGGTATTGTTGACTGTGGC
TATGGATGAAATAGTATTCATTTGAACGGTGAGTTTGAATCAAATCAGCCAATATAAAAT
TGGTTAGCTTTGT