Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0540800-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:21619517:21624945:1 gene:Os12g0540800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactose oxidase/kelch, beta-propeller domain containing protein. (Os12t0540800-01);Hypothetical conserved gene. (Os12t0540800-02)
Sequence

ATGGCGAGTGCAAAAGTGTCGCACCCCGTTAAATCGGCCTCCGAGGAGTCCAAAGTACTC
GTGGTGGAGAATGGGAAGATGGTTGATGTTCAGGACAAGGAAATCACCATGGAAGGCCTC
TGTTCCATAAGTTCTTATGACCAGTGGGCACGGATCCCTGTTTCTGGACCGCTTCCGAAA
CCTCGCTACAAGCATGCAGCTGCTGTGGTTCAGGAAAAGATGTATGTTTTTGGTGGAAAT
CACAATGGCCGTTACCTTGGTGACATGCAGGTTCTGGATTTCAAATGTTTATCATGGTCG
AAGCTAGAAGCTAAAATACAATCAGAAGAACCTTCAGACTTGACTGGAACAGCTTCGCTT
CCTCCTTGTGCTGGTCATGCACTGGTTCCATGGGGAAACAAGATCCTCTGTCTTGCAGGA
CACACAAGGGAACCTACAGAAAGTCTCAGTGTTAAGGAGTTTGATCCACAAACTTGCACC
TGGTCAACCTTGCGCACTTATGGCAGATCACCGAGCTCATGCGGTGGCCAATCAGTGACT
CTTGTTGGAGGCACATTAGTAGTGTTTGGAGGTGAAGGTGATGGGAGATCCCTTCTGAAT
GACCTGCACGTTCTTGATCTCGAGACCATGACTTGGGATGAATTTGAGACCACAGGCACA
CCCCCTTCTCCAAGGTCAGAGCATGCTGCTGCGTGCTATGCTGATCGTTATCTCTTGATA
TTTGGCGGGGGTTCTCATTCTACATGTTTCAGTGATCTACATCTCCTTGACATGCAGACG
ATGGAATGGTCAAGACCAGAACATCAGGGTATTACTCCCGAACCAAGAGCAGGGCATGCA
GGTGTTACGGTTGGTGAGAACTGGTTTATTACTGGAGGTGGTAATAACAAGAAAGGTGTC
CCAGAAACACTTGTACTTAACATGTCAACATTTGTATGGTCAGTCGTTACTGGTCTTGAA
GGCCGTGCACCCCCAACAAGTGAGGGCTCAAGTTTAGTGCTGCACAAAGTTAATGGTGAA
GATTTTCTGGTGTCATTTGGAGGATACAGTGGACGTTACAGTAATGAGATTTATGCTCTC
AAGTCAAGTCGAAAGTCCGGTGTGCCATCTGGGCAACTAAATGAACCTGAAACAAATGGA
TTGGCCTCTGTGGCAGAAAATTCTAGCAGAGGGGTCATATTTGAAATTGAAGAACTTCAA
GATGAAAAGACTATTAAGAGGGCAGATACAAGCAAAACTTTGTTGCAAGCAGTTAAGGGT
GAGAAGAGTCATATAGAAGAAAAACTTAACCAGGAAGAGCTGCAGAGTTCCAGACTGAAG
CAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAACTTACCAAGGAACTTGACTTAGTC
CGCAATCAACTTTCTGCTGAAGAAGCAAGGGCGTCGCAACTTGAGAACGAAATTTCGGAT
CTTCAACAAAGGCTGCAGAAGATGGAGACCCTGGAAAAGGAGTCCGAATCGCTTCGGCTT
GAAAAGGATGCAGAGTCCGACGATTCATCTTCAGGCAGCAACCAGCGGCCTGCTGATAAG
GGCTTCTGGAGGTGGAATGGATAA

Peptide Sequence

PEP ID

Os12t0540800-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:21619517:21624945:1 gene:Os12g0540800 transcript:Os12t0540800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactose oxidase/kelch, beta-propeller domain containing protein. (Os12t0540800-01);Hypothetical conserved gene. (Os12t0540800-02)
Sequence

MASAKVSHPVKSASEESKVLVVENGKMVDVQDKEITMEGLCSISSYDQWARIPVSGPLPK
PRYKHAAAVVQEKMYVFGGNHNGRYLGDMQVLDFKCLSWSKLEAKIQSEEPSDLTGTASL
PPCAGHALVPWGNKILCLAGHTREPTESLSVKEFDPQTCTWSTLRTYGRSPSSCGGQSVT
LVGGTLVVFGGEGDGRSLLNDLHVLDLETMTWDEFETTGTPPSPRSEHAAACYADRYLLI
FGGGSHSTCFSDLHLLDMQTMEWSRPEHQGITPEPRAGHAGVTVGENWFITGGGNNKKGV
PETLVLNMSTFVWSVVTGLEGRAPPTSEGSSLVLHKVNGEDFLVSFGGYSGRYSNEIYAL
KSSRKSGVPSGQLNEPETNGLASVAENSSRGVIFEIEELQDEKTIKRADTSKTLLQAVKG
EKSHIEEKLNQEELQSSRLKQELANVETKNVELTKELDLVRNQLSAEEARASQLENEISD
LQQRLQKMETLEKESESLRLEKDAESDDSSSGSNQRPADKGFWRWNG

Transcript Sequence

Transcript ID

Os12t0540800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:21619517:21624945:1 gene:Os12g0540800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactose oxidase/kelch, beta-propeller domain containing protein. (Os12t0540800-01);Hypothetical conserved gene. (Os12t0540800-02)
Sequence

CATCTCTCCAAAGCCTCCGGCTCCACTCCAACTCCTCTCGCCTCCGCGGCTCCGCCCATT
TCGCGGGTCGCCGGAGCAGCAGCAGCCGCCGCGCCAGATCTCGAACCTTCTAGAAGCTTC
CGCCCGCTTCCACCCATCTCCCCCGAGGGCGCCTGGATCCCGAACCTTCTAGGCGTCGGC
GGCCGGGGAAGGCGCGAGGGGAGGCGGACCACGGGATCTGCTTCGAAGCCCCTCGCCTCC
TCTGGAACCTTCCGGGCGCGGCGCGGCGGGATGGCGAGTGCAAAAGTGTCGCACCCCGTT
AAATCGGCCTCCGAGGAGTCCAAAGTACTCGTGGTGGAGAATGGGAAGATGGTTGATGTT
CAGGACAAGGAAATCACCATGGAAGGCCTCTGTTCCATAAGTTCTTATGACCAGTGGGCA
CGGATCCCTGTTTCTGGACCGCTTCCGAAACCTCGCTACAAGCATGCAGCTGCTGTGGTT
CAGGAAAAGATGTATGTTTTTGGTGGAAATCACAATGGCCGTTACCTTGGTGACATGCAG
GTTCTGGATTTCAAATGTTTATCATGGTCGAAGCTAGAAGCTAAAATACAATCAGAAGAA
CCTTCAGACTTGACTGGAACAGCTTCGCTTCCTCCTTGTGCTGGTCATGCACTGGTTCCA
TGGGGAAACAAGATCCTCTGTCTTGCAGGACACACAAGGGAACCTACAGAAAGTCTCAGT
GTTAAGGAGTTTGATCCACAAACTTGCACCTGGTCAACCTTGCGCACTTATGGCAGATCA
CCGAGCTCATGCGGTGGCCAATCAGTGACTCTTGTTGGAGGCACATTAGTAGTGTTTGGA
GGTGAAGGTGATGGGAGATCCCTTCTGAATGACCTGCACGTTCTTGATCTCGAGACCATG
ACTTGGGATGAATTTGAGACCACAGGCACACCCCCTTCTCCAAGGTCAGAGCATGCTGCT
GCGTGCTATGCTGATCGTTATCTCTTGATATTTGGCGGGGGTTCTCATTCTACATGTTTC
AGTGATCTACATCTCCTTGACATGCAGACGATGGAATGGTCAAGACCAGAACATCAGGGT
ATTACTCCCGAACCAAGAGCAGGGCATGCAGGTGTTACGGTTGGTGAGAACTGGTTTATT
ACTGGAGGTGGTAATAACAAGAAAGGTGTCCCAGAAACACTTGTACTTAACATGTCAACA
TTTGTATGGTCAGTCGTTACTGGTCTTGAAGGCCGTGCACCCCCAACAAGTGAGGGCTCA
AGTTTAGTGCTGCACAAAGTTAATGGTGAAGATTTTCTGGTGTCATTTGGAGGATACAGT
GGACGTTACAGTAATGAGATTTATGCTCTCAAGTCAAGTCGAAAGTCCGGTGTGCCATCT
GGGCAACTAAATGAACCTGAAACAAATGGATTGGCCTCTGTGGCAGAAAATTCTAGCAGA
GGGGTCATATTTGAAATTGAAGAACTTCAAGATGAAAAGACTATTAAGAGGGCAGATACA
AGCAAAACTTTGTTGCAAGCAGTTAAGGGTGAGAAGAGTCATATAGAAGAAAAACTTAAC
CAGGAAGAGCTGCAGAGTTCCAGACTGAAGCAGGAATTAGCTAACGTGGAGACAAAAAAT
GTGGAACTTACCAAGGAACTTGACTTAGTCCGCAATCAACTTTCTGCTGAAGAAGCAAGG
GCGTCGCAACTTGAGAACGAAATTTCGGATCTTCAACAAAGGCTGCAGAAGATGGAGACC
CTGGAAAAGGAGTCCGAATCGCTTCGGCTTGAAAAGGATGCAGAGTCCGACGATTCATCT
TCAGGCAGCAACCAGCGGCCTGCTGATAAGGGCTTCTGGAGGTGGAATGGATAAAAATTC
ATCGATACAGGTAGTAGCATACTAGCATTGGATGTATGGAGGATATTTCCTGCAGAGTTG
CACATTCTTTCAATTTTTGCCCATTTCTTTTTTCCCCTGGAGAGCCCAGTATTCACAAGT
AGATCAAATATCGAAAAATGTTTACTCACAGAGAAACAGGATGATAGCAAATCGCGGTTC
CATCAAGAGAACTGATCAACCATGAGAAGAATTTAATAAAGTTTACAGGTGGTTCTATTT
TTTTC