Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0538900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:21493825:21500839:-1 gene:Os12g0538900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-type fold domain containing protein. (Os12t0538900-01);Similar to predicted protein. (Os12t0538900-02)
Sequence

ATGGACTCCCGCTCCATCAACCTCCGGGGTTTCGCCGGGAACGCCGGCAAAAACATCATG
CAGGGGATTGGGGGATTTGTTTTCGGAAATGAGAGGTCCGAGTCCAAGGAAGACAGCTAT
GTTGAGAGATTCCTTGATCGCATAAGCAATGGCACCATATCTGACGATAGGAGGTCTGCC
ATGACCGAGCTGCAGTCGCTTGTGGCAGAGTCTCGTTCTGCTCAGATGTCATTTGGAGCC
ATGGGATTTCCTGTTCTCCTCAACGTTTTAAAAGAAGACCGTGAAGATGTTGAGCTTGTG
AGAGGTGCTCTAGAAACCTTTGTGAGTGCACTGACTCCTATTGAAACCTCGCAAGGACCA
AAAACTGAGGTTCAGCCTGCATCAGTGAACTCTGATTTGCTTTCTCGAGAAACTGAGAAT
ATCTCTCTTCTTTTGAGCTTATTGTCAGAGGAGGATTTCTATGTGCGGTACTATACGATC
CAGCTTTTGACAGCGCTACTTACGAACTCGCTGAAAAGACTACAAGAGGCAATTCTATTG
ATTCCCCGGGGCATAACAGTTTTAATGGATATGCTTATGGATCGGGAGGTCATAAGGAAT
GAAGCACTGTTACTTCTTACTTATCTGACCAGGGATGCTGAGGAAATTCAAAAAATTGTG
GTATTTGAGGGTGTATTTGAGAAAATATTTAGCATTATCAGAGAGGAAGGATACTCTGAT
GGTGGTGTTGTTGTTCAGGATTGCCTTGAACTGCTAAATAATTTAATCCGACAAAATGCA
TCCAATCAGATGCTTCTGAAAGAGACAATCGGCTTTGATCCATTGATAGCAATACTAAAG
ATAAGGAGAGGCAGTGCATTCAATTTCACTCAACAAAAGACAGTAAATCTTCTCGGTGCT
TTAGATACTGTTGAGTTGCTTTTGATGGGAGGAGGCTCATCTGGTGAGCCAGGTAAAGAT
GCTAACAAGACCACCAACCAAACTGCTTTAGCTCAGAAAAATATTCTGGATCACCTTCTA
CTGTTAGGCGTGGAGAGTCAGTGGGCCCCTGTAGCTCTCCGCTGTATGGCCTTGCGATGC
ATTGGTAATTTGGTGTTAAGAAATCCTCAGAATCTTGATTCTCTTGCGAGCAAGCAAGTT
GGGGAAGATCCTCATGTTCAGCCTGCACTCAGTGCAATCTTTTCTATAATCTTGCGAACC
TCCTTAGCACAAGAATTTGTTGCTGCTGATTATGTCTTCAAGTGTTTCTGTGAGAAAAAT
CCTGGTGGCCAGGCTTTACTAGCATCAACGATTGCTCCACATCCAAATCAAGCACATGCT
ACATTTGGGGCCACTACTGACATGCCTTTTGGAAGTATACTTCTGCAAGCTCTGGTGTCA
AGTGATGATAATGGAGATATGGAGGCATGTTGCAGAGCATCTAGTGTTCTTTCTCACATA
ATCAAGGACAACTTGCAATGCAAAGATCGTGTACTGCAAATTCAGCTTGAAACACCTGCA
CCTTCCTTGGGACGCACTGAGCCACTACTGCACCGCATTGTTACATGTTTGTCTATTGCA
GCTTCAGCAGAAGGAGAAAATGGCCAAAGCGGTCAACCAGAAGAATCATATATTCAGCCA
GTCATTCTCCGGTTACTCATTGTATGGCTTGTGGATTGTGCTAATGCCGTAGATTGCCTT
TTGGAATCAGCAGTACATCTGAACTACATTATCGAGCTTGCTTCAAGTAAACGCTACAGT
GCTTGTGTTCGTGGATTGGCTGCCGTTGTTTTAGGTGCTTGTGTCCTGTATAATGCAAGC
CGGGAGAAGGGCCGAGATGCCTTTGCTGTTGCTGATGCTATAAGTCAGAAGATTGGCCTA
TCCACATACTTCTTGAGGTTCGATGAGTTGCGGAAAAGGTTTGCACATTCATCATCAGGG
CAGCAGAACCGCAAGCAGCTTTCACGGTCAAGTGCAAATAGTATGTCAGATTTCCAAGAG
ATTGAAGAGGAAGAAATAAATAAAGGCGATCAGCATCCAGTCCTGTCAGAAATCTTTGAT
TCACATTTTGTTAGTTTCCTCAGTAAGCTTGAGACTGATATTAGGGACAATATAATGGAT
ATATTTAGTCGAACAAAGACCGCAACTGCAATTATACCTGCTGAGTTGGAGCAGAAGAAT
GGGGAAGTTGATGGAGAATACATCAAGCGGCTAAAGTCATTTGTAGAGAAACAATGCAAT
GAAATGCAGGACTTGCTAGGTCGGAATGCAATGCTGGCAGAAGAGTTAGTGAGAACTGGT
GGTGGCAACTCCGCTGATTCCTTACAGAAACCAAGCAGTGGCCGAGAAAGGGTCCAAATC
GAATCCCTCAGACAAGAACTCGAAGGAGCAACCCGACGCATAGAGGCACTCAGAGCTGAA
CATACCCAGATCGAAGCCGAAGCTAGCAACCAACGAAACCTCGCAGCGAAACTGGAATCT
GATCTCAAGAGCCTGTCAGATGCTTACAACAGCCTTGAACAGGCCAACTTCCGTCTTGAC
TCTGAAGTGAAGGCCTTGCGGCAGGGAGGCAGTGCACCCTACCCCGATGTGGAAGCAATC
AAAGCGGAAGCGAAGGAGGAGGCAGAGAAGGAGAGCGAGGCGGAGCTAAACGATCTCCTC
GTCTGCCTGGGCCAGGAGCAGAGCAAGGTGGAGAAGCTGAGCACGAGACTGGCAGAGCTT
GGTGAAGATGTGGACACCTTGCTGCAAGGCATTGGCGATGACACTGCTTTGCCAGATGAT
GACGACGATGAAGATGAAGATGATGAGTAA

Peptide Sequence

PEP ID

Os12t0538900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:21493825:21500839:-1 gene:Os12g0538900 transcript:Os12t0538900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-type fold domain containing protein. (Os12t0538900-01);Similar to predicted protein. (Os12t0538900-02)
Sequence

MDSRSINLRGFAGNAGKNIMQGIGGFVFGNERSESKEDSYVERFLDRISNGTISDDRRSA
MTELQSLVAESRSAQMSFGAMGFPVLLNVLKEDREDVELVRGALETFVSALTPIETSQGP
KTEVQPASVNSDLLSRETENISLLLSLLSEEDFYVRYYTIQLLTALLTNSLKRLQEAILL
IPRGITVLMDMLMDREVIRNEALLLLTYLTRDAEEIQKIVVFEGVFEKIFSIIREEGYSD
GGVVVQDCLELLNNLIRQNASNQMLLKETIGFDPLIAILKIRRGSAFNFTQQKTVNLLGA
LDTVELLLMGGGSSGEPGKDANKTTNQTALAQKNILDHLLLLGVESQWAPVALRCMALRC
IGNLVLRNPQNLDSLASKQVGEDPHVQPALSAIFSIILRTSLAQEFVAADYVFKCFCEKN
PGGQALLASTIAPHPNQAHATFGATTDMPFGSILLQALVSSDDNGDMEACCRASSVLSHI
IKDNLQCKDRVLQIQLETPAPSLGRTEPLLHRIVTCLSIAASAEGENGQSGQPEESYIQP
VILRLLIVWLVDCANAVDCLLESAVHLNYIIELASSKRYSACVRGLAAVVLGACVLYNAS
REKGRDAFAVADAISQKIGLSTYFLRFDELRKRFAHSSSGQQNRKQLSRSSANSMSDFQE
IEEEEINKGDQHPVLSEIFDSHFVSFLSKLETDIRDNIMDIFSRTKTATAIIPAELEQKN
GEVDGEYIKRLKSFVEKQCNEMQDLLGRNAMLAEELVRTGGGNSADSLQKPSSGRERVQI
ESLRQELEGATRRIEALRAEHTQIEAEASNQRNLAAKLESDLKSLSDAYNSLEQANFRLD
SEVKALRQGGSAPYPDVEAIKAEAKEEAEKESEAELNDLLVCLGQEQSKVEKLSTRLAEL
GEDVDTLLQGIGDDTALPDDDDDEDEDDE

Transcript Sequence

Transcript ID

Os12t0538900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:21493825:21500839:-1 gene:Os12g0538900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-type fold domain containing protein. (Os12t0538900-01);Similar to predicted protein. (Os12t0538900-02)
Sequence

TCCCTCCCCCATCTTCGCCTTGCTTCCGAATCCAACCCCAACTCCCGATCCCCTCCTCCT
CCGCCACCGCCGCCTTCGCCGCTGCGGCGATCTCACTCGCACTTCTCTCTATCCCCCAGG
TGGCCGCGATCCGATGGACTCCCGCTCCATCAACCTCCGGGGTTTCGCCGGGAACGCCGG
CAAAAACATCATGCAGGGGATTGGGGGATTTGTTTTCGGAAATGAGAGGTCCGAGTCCAA
GGAAGACAGCTATGTTGAGAGATTCCTTGATCGCATAAGCAATGGCACCATATCTGACGA
TAGGAGGTCTGCCATGACCGAGCTGCAGTCGCTTGTGGCAGAGTCTCGTTCTGCTCAGAT
GTCATTTGGAGCCATGGGATTTCCTGTTCTCCTCAACGTTTTAAAAGAAGACCGTGAAGA
TGTTGAGCTTGTGAGAGGTGCTCTAGAAACCTTTGTGAGTGCACTGACTCCTATTGAAAC
CTCGCAAGGACCAAAAACTGAGGTTCAGCCTGCATCAGTGAACTCTGATTTGCTTTCTCG
AGAAACTGAGAATATCTCTCTTCTTTTGAGCTTATTGTCAGAGGAGGATTTCTATGTGCG
GTACTATACGATCCAGCTTTTGACAGCGCTACTTACGAACTCGCTGAAAAGACTACAAGA
GGCAATTCTATTGATTCCCCGGGGCATAACAGTTTTAATGGATATGCTTATGGATCGGGA
GGTCATAAGGAATGAAGCACTGTTACTTCTTACTTATCTGACCAGGGATGCTGAGGAAAT
TCAAAAAATTGTGGTATTTGAGGGTGTATTTGAGAAAATATTTAGCATTATCAGAGAGGA
AGGATACTCTGATGGTGGTGTTGTTGTTCAGGATTGCCTTGAACTGCTAAATAATTTAAT
CCGACAAAATGCATCCAATCAGATGCTTCTGAAAGAGACAATCGGCTTTGATCCATTGAT
AGCAATACTAAAGATAAGGAGAGGCAGTGCATTCAATTTCACTCAACAAAAGACAGTAAA
TCTTCTCGGTGCTTTAGATACTGTTGAGTTGCTTTTGATGGGAGGAGGCTCATCTGGTGA
GCCAGGTAAAGATGCTAACAAGACCACCAACCAAACTGCTTTAGCTCAGAAAAATATTCT
GGATCACCTTCTACTGTTAGGCGTGGAGAGTCAGTGGGCCCCTGTAGCTCTCCGCTGTAT
GGCCTTGCGATGCATTGGTAATTTGGTGTTAAGAAATCCTCAGAATCTTGATTCTCTTGC
GAGCAAGCAAGTTGGGGAAGATCCTCATGTTCAGCCTGCACTCAGTGCAATCTTTTCTAT
AATCTTGCGAACCTCCTTAGCACAAGAATTTGTTGCTGCTGATTATGTCTTCAAGTGTTT
CTGTGAGAAAAATCCTGGTGGCCAGGCTTTACTAGCATCAACGATTGCTCCACATCCAAA
TCAAGCACATGCTACATTTGGGGCCACTACTGACATGCCTTTTGGAAGTATACTTCTGCA
AGCTCTGGTGTCAAGTGATGATAATGGAGATATGGAGGCATGTTGCAGAGCATCTAGTGT
TCTTTCTCACATAATCAAGGACAACTTGCAATGCAAAGATCGTGTACTGCAAATTCAGCT
TGAAACACCTGCACCTTCCTTGGGACGCACTGAGCCACTACTGCACCGCATTGTTACATG
TTTGTCTATTGCAGCTTCAGCAGAAGGAGAAAATGGCCAAAGCGGTCAACCAGAAGAATC
ATATATTCAGCCAGTCATTCTCCGGTTACTCATTGTATGGCTTGTGGATTGTGCTAATGC
CGTAGATTGCCTTTTGGAATCAGCAGTACATCTGAACTACATTATCGAGCTTGCTTCAAG
TAAACGCTACAGTGCTTGTGTTCGTGGATTGGCTGCCGTTGTTTTAGGTGCTTGTGTCCT
GTATAATGCAAGCCGGGAGAAGGGCCGAGATGCCTTTGCTGTTGCTGATGCTATAAGTCA
GAAGATTGGCCTATCCACATACTTCTTGAGGTTCGATGAGTTGCGGAAAAGGTTTGCACA
TTCATCATCAGGGCAGCAGAACCGCAAGCAGCTTTCACGGTCAAGTGCAAATAGTATGTC
AGATTTCCAAGAGATTGAAGAGGAAGAAATAAATAAAGGCGATCAGCATCCAGTCCTGTC
AGAAATCTTTGATTCACATTTTGTTAGTTTCCTCAGTAAGCTTGAGACTGATATTAGGGA
CAATATAATGGATATATTTAGTCGAACAAAGACCGCAACTGCAATTATACCTGCTGAGTT
GGAGCAGAAGAATGGGGAAGTTGATGGAGAATACATCAAGCGGCTAAAGTCATTTGTAGA
GAAACAATGCAATGAAATGCAGGACTTGCTAGGTCGGAATGCAATGCTGGCAGAAGAGTT
AGTGAGAACTGGTGGTGGCAACTCCGCTGATTCCTTACAGAAACCAAGCAGTGGCCGAGA
AAGGGTCCAAATCGAATCCCTCAGACAAGAACTCGAAGGAGCAACCCGACGCATAGAGGC
ACTCAGAGCTGAACATACCCAGATCGAAGCCGAAGCTAGCAACCAACGAAACCTCGCAGC
GAAACTGGAATCTGATCTCAAGAGCCTGTCAGATGCTTACAACAGCCTTGAACAGGCCAA
CTTCCGTCTTGACTCTGAAGTGAAGGCCTTGCGGCAGGGAGGCAGTGCACCCTACCCCGA
TGTGGAAGCAATCAAAGCGGAAGCGAAGGAGGAGGCAGAGAAGGAGAGCGAGGCGGAGCT
AAACGATCTCCTCGTCTGCCTGGGCCAGGAGCAGAGCAAGGTGGAGAAGCTGAGCACGAG
ACTGGCAGAGCTTGGTGAAGATGTGGACACCTTGCTGCAAGGCATTGGCGATGACACTGC
TTTGCCAGATGATGACGACGATGAAGATGAAGATGATGAGTAATATAATGTGTGTAATTC
TGTCATCTCATGGTGTAACCAGTTGGGGATCATGCTGTTGTAGCAACAACTGTACAGTGG
ATGATGATATTTAGACAAAGGTTTCAAGTTATTTATGTTGGATGATTGAATTGCTGAATT
TAGTTCTCAGAATTAAGTGAAGTCCTTAGGAAC