Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0538800-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:21488044:21493700:1 gene:Os12g0538800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Kelch-type beta propeller domain containing protein. (Os12t0538800-01)
Sequence

ATGCCGAATATGTTCGGGTTCTCGAGGAGCCGGATGAGGATCGGAAGATCGAAAGGGCAC
TCAACAGATCCTTTGGACAGCTCTAAGAGTCCTTCAGGGCTTGTGAAGCACCTCAGCCTG
CCTAATGGGGATGACCAAATTACAACGTCAGTGAGTGGCCGTGTAGATGATCTCGCCTTC
CGTTGCTCATCTGACACATATGATCTCGACGACCGCGCTTTGGTTAGCTCACGGAACTGG
GCTGTCCTTTCTACAGAGGGCAGTAGACCATCACCGCGTTTTGCGCATGCAGCAGCCCTT
GTAGGGAGCAAAATGGTAGTGTTTGGTGGCGATTCTGGTGATCAATTGTTGGATGATACA
AAGATATTGAATTTAGAGAAGCTTACATGGGACTCTGTAGCTCCTAAGGTCCGTCCATCG
CCAAACAGACGTCCGTCAAAGTTGCCAGCCTGCAAAGGTCATTGTCTGGTCCAATGGGGG
AACAGTGTTATTCTTGTTGGCGGTAAAACTGAACCTGCATCCGATCGTTTAGCAGTGTGG
ACTTTCAATATGGAAACAGAGGTTTGGTCACTTATGGAAGCCAAGGGTGATATCCCTGCA
GCTCGGAGTGGCCACACGGTGACCAGAGCAGGTGCTACATTGATACTTTTTGGTGGTGAG
GACACAAAAGGAAAGAAACGACACGACCTTCACATGTTCGACCTGAAGTCATCAACATGG
CTACCTTTGAACTATAAAGGCTCTGGACCTTCTCCAAGATCCAATCATGTAGCTGCACTA
TATGAAGATAGGATCCTTCTGATTTTTGGAGGCCACTCAAAATCCAAGACCCTGAATGAT
CTGTTTTCTTTGGATTTTGAGACAATGGTATGGTCAAGAGTGAAAATCCATGGTCCTCAT
CCAACACCTCGAGCCGGTTGCAGTGGAGTTCTATGTGGAACTAAGTGGTACATTGCTGGC
GGTGGAAGCAAGAAAAAACGGCATGCAGAAACCTGGGCTTTTGATGTTGTAGAATATAAG
TGGTCGGTATGTGTAGTACCCCCTAGTTCCTCGATTGCTACAAAGAAAGATTTCAGTATG
GTTCCTTTGTACCACAGGGACAAAATTGTTCTTGTTGCTTTTGGAGGAAACAGAAAGGAG
CCATCCGACAAGGTTGAAATATTGGTGGTACTGCAAAATGAACATTCTTTTAGCAGGCGG
TCTGCACCAGATGTAGATCCTTTACTATATGAATACTCTCCGAGCACCAAGGAGCTTGCC
AGCCATCTTAACAACTGTGCTCCTTTGTATTCCAATAGTTCTGTTGCAAGGCACAGTCTC
GCTTCTACGGTAGAACACCCACCTAGAAGGGAATTACTCTCTGAGCCATTGTTACAGAAT
CCAAATTTGGGCGCTTCACTCCACAGGCAGTTCCATCAATCAGAAGCGTGCAGTTTAGCC
CAAAAACTGCAGAAACCGATCGACGATGACAAGTACGATGACACTGATGATTGTTCTTCA
TGTCAAGCAAGCACTCCAAAAGAGTATCGAAGCAAGAGAACTGGAACTGATGCTCAGATT
AACATGGCCAGAATTTTATCCAGCAAGGAAGAAAATCTGGAGACCACGGGATCAAGTGCA
AGAAGGATAGCAAGATGCTCTTCAGACATTAGTCATCTATACAATACAAAAATAGTAGAC
TTGATCAAAAGAAGCTCTGCACTTGAAGACCAGCTTGCGACTGCCTTGGTGAGCAAAGAA
CAGGCGGAGAAGAATTTATCGTCGGTCATCAACAGCAGGGAGCAGCTGGAAAGGAGGCTT
GCCAATAAGGAAAAAGAAGCTGAGATGCTGAAGGAGAAGATAGCAGGCTTAGAGTTGGCA
CAAGAGGAGTCAAACAACCTCTCGAACACCGTTCATGCCGATAATGTGCGTCTGGAACGT
GAAGTGGCATTCTTGAAGGCCATTACAGATGAGACTCAAAAGGAACTCCATTCGACCCGC
CGAGTTTTAGCGGGAGAACAGTCGAGGGCATTCCAGCTCCAGGTTGAAGTGTTCCATCTC
AAACAACGGTTGCAGATGGAAGGAAGAGCGGGAACGCCAAAGAACCCTCCTGTTTAA

Peptide Sequence

PEP ID

Os12t0538800-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:21488044:21493700:1 gene:Os12g0538800 transcript:Os12t0538800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Kelch-type beta propeller domain containing protein. (Os12t0538800-01)
Sequence

MPNMFGFSRSRMRIGRSKGHSTDPLDSSKSPSGLVKHLSLPNGDDQITTSVSGRVDDLAF
RCSSDTYDLDDRALVSSRNWAVLSTEGSRPSPRFAHAAALVGSKMVVFGGDSGDQLLDDT
KILNLEKLTWDSVAPKVRPSPNRRPSKLPACKGHCLVQWGNSVILVGGKTEPASDRLAVW
TFNMETEVWSLMEAKGDIPAARSGHTVTRAGATLILFGGEDTKGKKRHDLHMFDLKSSTW
LPLNYKGSGPSPRSNHVAALYEDRILLIFGGHSKSKTLNDLFSLDFETMVWSRVKIHGPH
PTPRAGCSGVLCGTKWYIAGGGSKKKRHAETWAFDVVEYKWSVCVVPPSSSIATKKDFSM
VPLYHRDKIVLVAFGGNRKEPSDKVEILVVLQNEHSFSRRSAPDVDPLLYEYSPSTKELA
SHLNNCAPLYSNSSVARHSLASTVEHPPRRELLSEPLLQNPNLGASLHRQFHQSEACSLA
QKLQKPIDDDKYDDTDDCSSCQASTPKEYRSKRTGTDAQINMARILSSKEENLETTGSSA
RRIARCSSDISHLYNTKIVDLIKRSSALEDQLATALVSKEQAEKNLSSVINSREQLERRL
ANKEKEAEMLKEKIAGLELAQEESNNLSNTVHADNVRLEREVAFLKAITDETQKELHSTR
RVLAGEQSRAFQLQVEVFHLKQRLQMEGRAGTPKNPPV

Transcript Sequence

Transcript ID

Os12t0538800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:21488044:21493700:1 gene:Os12g0538800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Kelch-type beta propeller domain containing protein. (Os12t0538800-01)
Sequence

GTAGATCACGCACCTTTCTGGCTTTCAGCAACCCCCCTTTTCACCTCTACTCTCCTCTCC
TCTCCCCGAGACCGAGACACCGAGACTGAGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGAGTGAGAGAGAGCAGAGCAGAGCAGCGGCTTCACCGGAGGCCTTCTCCCGTCGGAGGT
TGCTGATTCTTTCTTGCTCAGAGAACAAATCAACAATGTGCAGTCAGGTGGCTTGGTTCT
GAGAAGAATTTGGGGGGAGGAAACACGGCTAATGCCGAATATGTTCGGGTTCTCGAGGAG
CCGGATGAGGATCGGAAGATCGAAAGGGCACTCAACAGATCCTTTGGACAGCTCTAAGAG
TCCTTCAGGGCTTGTGAAGCACCTCAGCCTGCCTAATGGGGATGACCAAATTACAACGTC
AGTGAGTGGCCGTGTAGATGATCTCGCCTTCCGTTGCTCATCTGACACATATGATCTCGA
CGACCGCGCTTTGGTTAGCTCACGGAACTGGGCTGTCCTTTCTACAGAGGGCAGTAGACC
ATCACCGCGTTTTGCGCATGCAGCAGCCCTTGTAGGGAGCAAAATGGTAGTGTTTGGTGG
CGATTCTGGTGATCAATTGTTGGATGATACAAAGATATTGAATTTAGAGAAGCTTACATG
GGACTCTGTAGCTCCTAAGGTCCGTCCATCGCCAAACAGACGTCCGTCAAAGTTGCCAGC
CTGCAAAGGTCATTGTCTGGTCCAATGGGGGAACAGTGTTATTCTTGTTGGCGGTAAAAC
TGAACCTGCATCCGATCGTTTAGCAGTGTGGACTTTCAATATGGAAACAGAGGTTTGGTC
ACTTATGGAAGCCAAGGGTGATATCCCTGCAGCTCGGAGTGGCCACACGGTGACCAGAGC
AGGTGCTACATTGATACTTTTTGGTGGTGAGGACACAAAAGGAAAGAAACGACACGACCT
TCACATGTTCGACCTGAAGTCATCAACATGGCTACCTTTGAACTATAAAGGCTCTGGACC
TTCTCCAAGATCCAATCATGTAGCTGCACTATATGAAGATAGGATCCTTCTGATTTTTGG
AGGCCACTCAAAATCCAAGACCCTGAATGATCTGTTTTCTTTGGATTTTGAGACAATGGT
ATGGTCAAGAGTGAAAATCCATGGTCCTCATCCAACACCTCGAGCCGGTTGCAGTGGAGT
TCTATGTGGAACTAAGTGGTACATTGCTGGCGGTGGAAGCAAGAAAAAACGGCATGCAGA
AACCTGGGCTTTTGATGTTGTAGAATATAAGTGGTCGGTATGTGTAGTACCCCCTAGTTC
CTCGATTGCTACAAAGAAAGATTTCAGTATGGTTCCTTTGTACCACAGGGACAAAATTGT
TCTTGTTGCTTTTGGAGGAAACAGAAAGGAGCCATCCGACAAGGTTGAAATATTGGTGGT
ACTGCAAAATGAACATTCTTTTAGCAGGCGGTCTGCACCAGATGTAGATCCTTTACTATA
TGAATACTCTCCGAGCACCAAGGAGCTTGCCAGCCATCTTAACAACTGTGCTCCTTTGTA
TTCCAATAGTTCTGTTGCAAGGCACAGTCTCGCTTCTACGGTAGAACACCCACCTAGAAG
GGAATTACTCTCTGAGCCATTGTTACAGAATCCAAATTTGGGCGCTTCACTCCACAGGCA
GTTCCATCAATCAGAAGCGTGCAGTTTAGCCCAAAAACTGCAGAAACCGATCGACGATGA
CAAGTACGATGACACTGATGATTGTTCTTCATGTCAAGCAAGCACTCCAAAAGAGTATCG
AAGCAAGAGAACTGGAACTGATGCTCAGATTAACATGGCCAGAATTTTATCCAGCAAGGA
AGAAAATCTGGAGACCACGGGATCAAGTGCAAGAAGGATAGCAAGATGCTCTTCAGACAT
TAGTCATCTATACAATACAAAAATAGTAGACTTGATCAAAAGAAGCTCTGCACTTGAAGA
CCAGCTTGCGACTGCCTTGGTGAGCAAAGAACAGGCGGAGAAGAATTTATCGTCGGTCAT
CAACAGCAGGGAGCAGCTGGAAAGGAGGCTTGCCAATAAGGAAAAAGAAGCTGAGATGCT
GAAGGAGAAGATAGCAGGCTTAGAGTTGGCACAAGAGGAGTCAAACAACCTCTCGAACAC
CGTTCATGCCGATAATGTGCGTCTGGAACGTGAAGTGGCATTCTTGAAGGCCATTACAGA
TGAGACTCAAAAGGAACTCCATTCGACCCGCCGAGTTTTAGCGGGAGAACAGTCGAGGGC
ATTCCAGCTCCAGGTTGAAGTGTTCCATCTCAAACAACGGTTGCAGATGGAAGGAAGAGC
GGGAACGCCAAAGAACCCTCCTGTTTAATCCATAGTAAGCAACAAAGAGCAAAGTGTGTT
TAGTTCATATGTTTACATCTCTGGAATAATAGTGGTTGTGTGTTTGTAACATCGTCTTGT
ACATCAATTTGTTACAGGAGTGGAGTGTATATGTAATAACAGGGTTCGGTTAACCATTCT
GTTACATGAACTGATACAGATTTGTAATTTGGCTGAGATTTTGTGTGCAGTTGATGAATT
TAGAACAGTTTGCTC