Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0538500-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:21456307:21459844:1 gene:Os12g0538500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to PGPD14 protein. (Os12t0538500-01)
Sequence

ATGGGAGGGGCGCACTTCCCCGGTGAGGGCGAGGTGGTGGCCGGGGAGGGCGACGCCGTC
GTCCCCCTCCGCGACGTGGGCAAGATGGAGCACGGGTGCGAGCATTACAGGAGGAGATGC
AAGATCGTGGCGCCCTGCTGCGGCGAGGTGTTCGCTTGCCGCCATTGCCACAACGATGCC
ACGGCTTCAGGTGATCGGCATACCATTTGCCGCCAGGATGTTGAAAAAGTAGTATGTCTA
CTCTGTGATACTGAACAGCCGGTGTCACAAGTGTGCATAAACTGTGGTGTCAATATGGGA
GAGTACTTTTGTGATGTATGCAAGTTTTATGATGATGATACAGAGAAAGGGCAGTTTCAT
TGCTACGATTGTGGCATATGCAGGGTTGGTGGCAAGGAAAACTACTTCCACTGCGCAAAG
TGCGGGTCTTGTTATGCTGTTGCTCTGCGTGATAACCATCAGTGTGTGGAGAACTCAATG
AGGCAGAATTGCCCAATTTGTTATGAGTATCTATTTGATTCATTAAAAGGAACACGAGTT
CTCGACTGTGGACACACGATGCACATGGAATGCTTTTCTGAGATGGTGGAACATAACAAA
TACACTTGTCCAATATGCTCCAAGACAGCTCTTGATATGACACATCACTGGGCATTGTTA
GATCAAGAGATTGAAGCAACAATCATGCCTCCCGTCTACCGTTACAAGGTTTGGGTGCTC
TGTAATGACTGCAACAAGGTCTCAGAAGTGGACTTCCATGTGATTGGCCACAAGTGCAGC
CACTGCAACTCGTACAATACTCGATCGACATCACGGCCTGCGGATTTATCAGGAAGCAGT
TCTCCCTCGACGTCAGATTCGTCCGAAAACAATCCGTAG

Peptide Sequence

PEP ID

Os12t0538500-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:21456307:21459844:1 gene:Os12g0538500 transcript:Os12t0538500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to PGPD14 protein. (Os12t0538500-01)
Sequence

MGGAHFPGEGEVVAGEGDAVVPLRDVGKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDA
TASGDRHTICRQDVEKVVCLLCDTEQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFH
CYDCGICRVGGKENYFHCAKCGSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRV
LDCGHTMHMECFSEMVEHNKYTCPICSKTALDMTHHWALLDQEIEATIMPPVYRYKVWVL
CNDCNKVSEVDFHVIGHKCSHCNSYNTRSTSRPADLSGSSSPSTSDSSENNP

Transcript Sequence

Transcript ID

Os12t0538500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:21456307:21459844:1 gene:Os12g0538500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to PGPD14 protein. (Os12t0538500-01)
Sequence

GGCCTAGCCCGGCCAATTTCCATCGCAGCCATTTTTACCCCTAGCCCCCTCCGCTTCCTC
CTTTTTACATCCAAACCCCTCTTCCACTCCCCTCGCCGCCGCCGCCTCCGCCGTCGGGGA
GGATGGGAGGGGCGCACTTCCCCGGTGAGGGCGAGGTGGTGGCCGGGGAGGGCGACGCCG
TCGTCCCCCTCCGCGACGTGGGCAAGATGGAGCACGGGTGCGAGCATTACAGGAGGAGAT
GCAAGATCGTGGCGCCCTGCTGCGGCGAGGTGTTCGCTTGCCGCCATTGCCACAACGATG
CCACGGCTTCAGGTGATCGGCATACCATTTGCCGCCAGGATGTTGAAAAAGTAGTATGTC
TACTCTGTGATACTGAACAGCCGGTGTCACAAGTGTGCATAAACTGTGGTGTCAATATGG
GAGAGTACTTTTGTGATGTATGCAAGTTTTATGATGATGATACAGAGAAAGGGCAGTTTC
ATTGCTACGATTGTGGCATATGCAGGGTTGGTGGCAAGGAAAACTACTTCCACTGCGCAA
AGTGCGGGTCTTGTTATGCTGTTGCTCTGCGTGATAACCATCAGTGTGTGGAGAACTCAA
TGAGGCAGAATTGCCCAATTTGTTATGAGTATCTATTTGATTCATTAAAAGGAACACGAG
TTCTCGACTGTGGACACACGATGCACATGGAATGCTTTTCTGAGATGGTGGAACATAACA
AATACACTTGTCCAATATGCTCCAAGACAGCTCTTGATATGACACATCACTGGGCATTGT
TAGATCAAGAGATTGAAGCAACAATCATGCCTCCCGTCTACCGTTACAAGGTTTGGGTGC
TCTGTAATGACTGCAACAAGGTCTCAGAAGTGGACTTCCATGTGATTGGCCACAAGTGCA
GCCACTGCAACTCGTACAATACTCGATCGACATCACGGCCTGCGGATTTATCAGGAAGCA
GTTCTCCCTCGACGTCAGATTCGTCCGAAAACAATCCGTAGATAACATGCCATGTTGGTG
CCCAACAAGATCTACAGTTTAGACAATCAAGTCCCAGATTCATACATATACAAGTAGTAG
AAGGAACATTGTTTTGCGGCTAGCCTATCCAAGTGCCTACCCAATTCTTCAAGATTCAAT
TGATTCCTTGAATCTTCATGTGTTGGAACTGCTACTAGACAAAAGCTATTGTGATGATAC
CATATGTTGTGTTGAATCTTTAATCACAGCCATGGCTGTTATCAGTGTGGGTGAAAGTGA
AACCCATCATGTTATCCAGGAGCTGAATGTTGATGATTGCAATCC