Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0538100-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:21429635:21431701:-1 gene:Os12g0538100 gene_biotype:protein_coding transcript_biotype:protein_coding description:rRNA processing domain containing protein. (Os12t0538100-01)
Sequence

ATGAAGCGTCCACCGCCACGCGAAGACGGCGCTGGAAGCGGAGGAGGAGACGGGGCCAAG
AAAGGGAAGGGGAGGTGGGGCGGCGGAGGGAGGAGGCGGAACGAGCAGCGGCTGGGGAGC
GGCGGCGGCGGCGCCCTGTCCCTCGCCGCCTTCGCCTACGCCAAGTCCAGGAACACCGGC
TACAACCCGGCCCTCATCAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGC
AAGTACAAGAGGTCAAAGAAGCAACAAAATCAGTCAAGCAATCCTCCACCATTTCCAATT
CCAAAGGAAGGAGGTGATGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAG
CGCGTTGCACCAAGCTTAAACGAAGAGTATGAGAAAAAACGGGCAGAGGATGAGAAGGCA
AAGAAGGAGCGGGAAGCGATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAAGCA
AGGCGGAGAGATTTAAGGGAGAAGATGTTCAAGAAAACAAGATCTGGGCAGCCTGTGATG
AAATACAGGATCCAGCATCTGTTGGAGACTGCATTAGAAAGCTCAAACAAGTAA

Peptide Sequence

PEP ID

Os12t0538100-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:21429635:21431701:-1 gene:Os12g0538100 transcript:Os12t0538100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:rRNA processing domain containing protein. (Os12t0538100-01)
Sequence

MKRPPPREDGAGSGGGDGAKKGKGRWGGGGRRRNEQRLGSGGGGALSLAAFAYAKSRNTG
YNPALIKKQKEFYKNAKLISKYKRSKKQQNQSSNPPPFPIPKEGGDDANNASKLHSKKKK
RVAPSLNEEYEKKRAEDEKAKKEREAIIQAKREERERSEARRRDLREKMFKKTRSGQPVM
KYRIQHLLETALESSNK

Transcript Sequence

Transcript ID

Os12t0538100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:21429635:21431701:-1 gene:Os12g0538100 gene_biotype:protein_coding transcript_biotype:protein_coding description:rRNA processing domain containing protein. (Os12t0538100-01)
Sequence

GATTTCCAGCGCCGCCGCCCGCCGCGCCGCCTTCTCTCGCCTCTAGGGTTCCGCCGTTTT
CCGCGGCGCGCCACCGCCGCCGCGGCGCCGCCCGTCACCGCAGGAGCCGGCAATGAAGCG
TCCACCGCCACGCGAAGACGGCGCTGGAAGCGGAGGAGGAGACGGGGCCAAGAAAGGGAA
GGGGAGGTGGGGCGGCGGAGGGAGGAGGCGGAACGAGCAGCGGCTGGGGAGCGGCGGCGG
CGGCGCCCTGTCCCTCGCCGCCTTCGCCTACGCCAAGTCCAGGAACACCGGCTACAACCC
GGCCCTCATCAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGCAAGTACAA
GAGGTCAAAGAAGCAACAAAATCAGTCAAGCAATCCTCCACCATTTCCAATTCCAAAGGA
AGGAGGTGATGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGCGTTGC
ACCAAGCTTAAACGAAGAGTATGAGAAAAAACGGGCAGAGGATGAGAAGGCAAAGAAGGA
GCGGGAAGCGATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAAGCAAGGCGGAG
AGATTTAAGGGAGAAGATGTTCAAGAAAACAAGATCTGGGCAGCCTGTGATGAAATACAG
GATCCAGCATCTGTTGGAGACTGCATTAGAAAGCTCAAACAAGTAAATGTTGCTACAAAA
ATGCTGTACTGATTGCTATAAGCAAATTTTGTAGATCAATGCAGTGACCTGTTTGTTTCA
ACTGGCTTCTGTAACTCTAGCACTCTACCATGTAAATCTTTGGTGATTTTCATTTCCATG
CTGATGGTGCACGCACTTTTGGTTTCTCTCTCATACGATGCAAGATGATTGGATAATAAA
GAAACAGAGATGACTGGATTGCCAGTG