Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0533600-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:21216320:21218986:-1 gene:Os12g0533600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os12t0533600-01)
Sequence

ATGGAGGCGCTCCGGGAGGCGGAGGCCGAGCTGACGGTGTACGTGCACCCCTCCAACGCC
GCCGACGTACGCCGCGCCGTCTCCCGCCAGCTCAGCACCACCCTCTTCTCGTATGAAGAT
CGCTTTGAAGGCGTTTTGCTAGCTCATGAGGTTGTTGTGAATGGTGATCGAGCGAAGATT
CTGAATGGTTTGGTACCATATTTCGGTGTACCGGTCCATGCGAATCTGCTGCTCTATTCT
CCCCAACCAGACATGATCCTTGAAGGGAAGGTTGAACTGCTTGGGAAGGAATCAATTCAT
GCCATTGTGCTAGGGGTTTTCTCAGCCGCCATCATGGCAGATGATATTAATGAGAAGTTC
AAGTTCAAAAGAAAAGGAGATGGAGGAAAATTCATAAGCCGGTCGGACAGACATCATGTG
ATTAGAAAGGGAAGCATGATACGGTTTTCTGTAAAAAGGGTGGATACAGAAATGAATTGT
CACATAACTGGATCTTTGCTCCCACCACATACTGGATCCATGCCTTGGCTATCAACTCAT
GATGCTGAATATGCATCAGAAATCAGCAGTGGTACAAGGAGACCAAGCAATGTTGGGATT
AAAATTAAGAATGAACAAGATCACAAAACATCGGACAATGAAGATAGCGTCATAAATTCG
GAACGGCCACACAAAAAGTCCCGAAAGAGGGCTTGGGAAGAATGA

Peptide Sequence

PEP ID

Os12t0533600-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:21216320:21218986:-1 gene:Os12g0533600 transcript:Os12t0533600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os12t0533600-01)
Sequence

MEALREAEAELTVYVHPSNAADVRRAVSRQLSTTLFSYEDRFEGVLLAHEVVVNGDRAKI
LNGLVPYFGVPVHANLLLYSPQPDMILEGKVELLGKESIHAIVLGVFSAAIMADDINEKF
KFKRKGDGGKFISRSDRHHVIRKGSMIRFSVKRVDTEMNCHITGSLLPPHTGSMPWLSTH
DAEYASEISSGTRRPSNVGIKIKNEQDHKTSDNEDSVINSERPHKKSRKRAWEE

Transcript Sequence

Transcript ID

Os12t0533600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:21216320:21218986:-1 gene:Os12g0533600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os12t0533600-01)
Sequence

GGTTGCTACGGCGCGCGCGGTTTTCCTTCTCTCTCCCAACGCTCGAGTCCGGCCGCCGCC
TAGGGTTTAGGGTTTTGCGCCGCCGCCGCCGCCGCCGCCGCCGGGATGGAGGCGCTCCGG
GAGGCGGAGGCCGAGCTGACGGTGTACGTGCACCCCTCCAACGCCGCCGACGTACGCCGC
GCCGTCTCCCGCCAGCTCAGCACCACCCTCTTCTCGTATGAAGATCGCTTTGAAGGCGTT
TTGCTAGCTCATGAGGTTGTTGTGAATGGTGATCGAGCGAAGATTCTGAATGGTTTGGTA
CCATATTTCGGTGTACCGGTCCATGCGAATCTGCTGCTCTATTCTCCCCAACCAGACATG
ATCCTTGAAGGGAAGGTTGAACTGCTTGGGAAGGAATCAATTCATGCCATTGTGCTAGGG
GTTTTCTCAGCCGCCATCATGGCAGATGATATTAATGAGAAGTTCAAGTTCAAAAGAAAA
GGAGATGGAGGAAAATTCATAAGCCGGTCGGACAGACATCATGTGATTAGAAAGGGAAGC
ATGATACGGTTTTCTGTAAAAAGGGTGGATACAGAAATGAATTGTCACATAACTGGATCT
TTGCTCCCACCACATACTGGATCCATGCCTTGGCTATCAACTCATGATGCTGAATATGCA
TCAGAAATCAGCAGTGGTACAAGGAGACCAAGCAATGTTGGGATTAAAATTAAGAATGAA
CAAGATCACAAAACATCGGACAATGAAGATAGCGTCATAAATTCGGAACGGCCACACAAA
AAGTCCCGAAAGAGGGCTTGGGAAGAATGATGCCATTCTAAAGTTTACAAGAACTTCATT
GAAATGCAAAGTTTTTGCTCTTAGTTTGGTGCATAGTAAGCTACAATGAAGAGCACTGGC
TTGTTTTGGGGACATGCAATTGCTCGTGCTGCCGGGGGATACTCACTGGAGAGAAGACGA
CGCCGATGCTCCATTTCAGTAGGTAGTTCTTTTGCCTGGTTGGTTCAGAAGCTATGATCC
CCAACTGTAATCGACCAGATAAAAGTTGTCATTTTTTGCCAACAGATGAATTCATGATGT
AGTGTTTACACCAGCAAAGAACATCCTGATTCCTGATTCCTGATTTCTGATGTACAAAAC
AATGATAAGTGCAAGAAAACTTGGGTACTACTAC