Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0533500-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:21210477:21214801:-1 gene:Os12g0533500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VIN3-LIKE 1, VERNALIZATION INSENSITIVE 3-LIKE 2 description:Protein containing PHD domain, FNIII domain and VID domain, Positive regulator of flowering (Os12t0533500-01)
Sequence	ATGGCCTCGAGCGCCGGAGGGGACCCGCCGCCGCCGGGGCTCTTCGCTGCTGCCTTACAC GCTTGTAGTGGTGCAAGCGCACTTGAAGAACATATACATGCTGATGATAGCAACACCATT TCAGATAATACCCTGGAACAGTTGGGTTTTCTAGACCAAGAGTCAAATGATGCAAGCGTT AACACAGAAAAGATACAATCAAGCACACCAAAATGCAAATCAGTGGAAGACATACCAATA GCACCAGCTGCAAAGAGATGTAAGAACATGGATTCCAAGAAACTTGTCCCAAACAGCAAT AACAATTCATGTCTCACTGGTAGCCAGGCTCCCAGAAAGCTTCCCAGAAAGGGGGACTAC CCTGTTCAACTACGTCGGAATGAAACATTTCAGGATACAAAGCCTCCCAGCACTTGGATA TGTAAAAATGCGGCCTGCAAAGCTGTGTTGACCGCTGACAATACATTCTGTAAGCGGTGC TCATGCTGTATTTGTCATCTTTTCGATGACAACAAAGATCCTAGCCTTTGGCTGGTCTGC TCATCGGAAACTGGTGACAGGGATTGCTGTGAGTCATCGTGCCACATTGAATGCGCACTC CAGCATCAGAAGGTAGGATGCGTCGATCTTGGTCAATCTATTCAGCTCGATGGTAATTAT TGCTGTGCTGCATGCGGAAAGGTTATTGGAATACTTGGGTTCTGGAAAAGGCAGCTGATG GTTGCTAAAGATGCTCGGCGTGTTGATATCCTTTGTTCCCGCATTTACTTGAGCCATAGA CTATTGGATGGCACAACGCGTTTTAAAGAATTTCATAAGATTGTAGAGGATGCAAAAGCA AAGCTGGAAACTGAGGTTGGCCCCCTTGATGGTACATCTTCAAAGATGGCCCGTGGCATT GTTGGCCGGCTGCCTGTTGCTGCTGATGTGCAGAAACTTTGCTCTTTAGCAATTGATATG GCAGATGCGTGGCTGAAGTCAAACTGTAAAGCAGAAACAAAACAAATTGATACACTTCCT GCTGCCTGCAGATTTAGATTTGAAGATATTACAACTTCATCATTAGTTGTGGTACTGAAA GAAGCTGCTTCTTCACAGTATCATGCTATCAAAGGCTATAAACTCTGGTATTGGAATAGC AGAGAACAGCCTTCCACTAGGGTGCCTGCAATTTTCCCCAAAGACCAAAGAAGGATACTG GTTTCCAATTTGCAGCCTTGCACGGAGTATGCTTTCCGGATCATTTCATTTACTGAGTAT GGTGATCTGGGCCACTCTGAATGCAAGTGTTTTACCAAGAGCGTGGAAATCATTCACAAG AACATGGAACATGGTGCAGAAGGTTGCTCATCTACTGCCAAGCGGGACAGCAAGAGTCGA AATGGCTGGTCATCAGGCTTCCAGGTGCACCAGCTGGGTAAAGTCCTGAGGAAAGCTTGG GCTGAGGAGAATGGTTGCCCCAGTGAGGCCTGCAAAGATGAGATTGAAGATTCCTGCTGT CAAAGTGATTCAGCTTTACACGATAAGGATCAAGCTGCACATGTTGTTTCCCACGAGCTT GATCTTAATGAATCCTCAGTCCCTGACCTAAACGCTGAGGTGGTGATGCCTACAGAGAGC TTCCGGAACGAGAATATATGTAGTCCAGGAAAGAATGGATTGAGAAAGTCGAATGGTTCC AGTGATTCTGATATTTGTGCTGAGGGGCTTGTTGGAGAGGCACCGGCCATGGAATCCCGA TCACAAAGTCGTAAACAGACATCAGATTTAGAGCAGGAAACTTATTTAGAGCAGGAAACT GGTGCTGATGATAGCACTTTGCTCATCAGCCCACCCAAGCACTTCTCCCGTAGGTTAGGT CAGTTAGATGATAACTACGAATACTGCGTCAAGGTTATACGGTGGTTGGAATGTTCTGGA CACATCGAAAAGGACTTTAGGATGAAATTTCTAACTTGGTTTAGCTTGAGATCGACGGAG CAGGAACGGAGGGTTGTGATCACTTTTATCCGCACCCTTGCTGATGATCCCAGTAGCTTG GCAGGACAGCTCCTGGATTCCTTCGAAGAAATTGTATCCAGTAAGAAGCCGAGAACTGGT TTCTGCAGTAAGTTATGGCACTAA

Peptide Sequence

PEP ID	Os12t0533500-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:21210477:21214801:-1 gene:Os12g0533500 transcript:Os12t0533500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VIN3-LIKE 1, VERNALIZATION INSENSITIVE 3-LIKE 2 description:Protein containing PHD domain, FNIII domain and VID domain, Positive regulator of flowering (Os12t0533500-01)
Sequence	MASSAGGDPPPPGLFAAALHACSGASALEEHIHADDSNTISDNTLEQLGFLDQESNDASV NTEKIQSSTPKCKSVEDIPIAPAAKRCKNMDSKKLVPNSNNNSCLTGSQAPRKLPRKGDY PVQLRRNETFQDTKPPSTWICKNAACKAVLTADNTFCKRCSCCICHLFDDNKDPSLWLVC SSETGDRDCCESSCHIECALQHQKVGCVDLGQSIQLDGNYCCAACGKVIGILGFWKRQLM VAKDARRVDILCSRIYLSHRLLDGTTRFKEFHKIVEDAKAKLETEVGPLDGTSSKMARGI VGRLPVAADVQKLCSLAIDMADAWLKSNCKAETKQIDTLPAACRFRFEDITTSSLVVVLK EAASSQYHAIKGYKLWYWNSREQPSTRVPAIFPKDQRRILVSNLQPCTEYAFRIISFTEY GDLGHSECKCFTKSVEIIHKNMEHGAEGCSSTAKRDSKSRNGWSSGFQVHQLGKVLRKAW AEENGCPSEACKDEIEDSCCQSDSALHDKDQAAHVVSHELDLNESSVPDLNAEVVMPTES FRNENICSPGKNGLRKSNGSSDSDICAEGLVGEAPAMESRSQSRKQTSDLEQETYLEQET GADDSTLLISPPKHFSRRLGQLDDNYEYCVKVIRWLECSGHIEKDFRMKFLTWFSLRSTE QERRVVITFIRTLADDPSSLAGQLLDSFEEIVSSKKPRTGFCSKLWH

Transcript Sequence

Transcript ID	Os12t0533500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:21210477:21214801:-1 gene:Os12g0533500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VIN3-LIKE 1, VERNALIZATION INSENSITIVE 3-LIKE 2 description:Protein containing PHD domain, FNIII domain and VID domain, Positive regulator of flowering (Os12t0533500-01)
Sequence	GTTCTTTCCTTCTTTTCATTGCAAAAGGAGTAAAAGCGGCAGCAGCAGAAAAACCCCTTC TTGCCCCCGCCCTCCGCCGCCGCCGCCGCCGAGGAGCCGGCCGTCCGCCGTCTCCCTCTC GCCCGTGGGCGTCAGACGGCGGCGGAGGCGGCCCCCCCTCCTTCTGCTGCTGCTGGGATG GCCTCGAGCGCCGGAGGGGACCCGCCGCCGCCGGGGCTCTTCGCTGCTGCCTTACACGCT TGTAGTGGTGCAAGCGCACTTGAAGAACATATACATGCTGATGATAGCAACACCATTTCA GATAATACCCTGGAACAGTTGGGTTTTCTAGACCAAGAGTCAAATGATGCAAGCGTTAAC ACAGAAAAGATACAATCAAGCACACCAAAATGCAAATCAGTGGAAGACATACCAATAGCA CCAGCTGCAAAGAGATGTAAGAACATGGATTCCAAGAAACTTGTCCCAAACAGCAATAAC AATTCATGTCTCACTGGTAGCCAGGCTCCCAGAAAGCTTCCCAGAAAGGGGGACTACCCT GTTCAACTACGTCGGAATGAAACATTTCAGGATACAAAGCCTCCCAGCACTTGGATATGT AAAAATGCGGCCTGCAAAGCTGTGTTGACCGCTGACAATACATTCTGTAAGCGGTGCTCA TGCTGTATTTGTCATCTTTTCGATGACAACAAAGATCCTAGCCTTTGGCTGGTCTGCTCA TCGGAAACTGGTGACAGGGATTGCTGTGAGTCATCGTGCCACATTGAATGCGCACTCCAG CATCAGAAGGTAGGATGCGTCGATCTTGGTCAATCTATTCAGCTCGATGGTAATTATTGC TGTGCTGCATGCGGAAAGGTTATTGGAATACTTGGGTTCTGGAAAAGGCAGCTGATGGTT GCTAAAGATGCTCGGCGTGTTGATATCCTTTGTTCCCGCATTTACTTGAGCCATAGACTA TTGGATGGCACAACGCGTTTTAAAGAATTTCATAAGATTGTAGAGGATGCAAAAGCAAAG CTGGAAACTGAGGTTGGCCCCCTTGATGGTACATCTTCAAAGATGGCCCGTGGCATTGTT GGCCGGCTGCCTGTTGCTGCTGATGTGCAGAAACTTTGCTCTTTAGCAATTGATATGGCA GATGCGTGGCTGAAGTCAAACTGTAAAGCAGAAACAAAACAAATTGATACACTTCCTGCT GCCTGCAGATTTAGATTTGAAGATATTACAACTTCATCATTAGTTGTGGTACTGAAAGAA GCTGCTTCTTCACAGTATCATGCTATCAAAGGCTATAAACTCTGGTATTGGAATAGCAGA GAACAGCCTTCCACTAGGGTGCCTGCAATTTTCCCCAAAGACCAAAGAAGGATACTGGTT TCCAATTTGCAGCCTTGCACGGAGTATGCTTTCCGGATCATTTCATTTACTGAGTATGGT GATCTGGGCCACTCTGAATGCAAGTGTTTTACCAAGAGCGTGGAAATCATTCACAAGAAC ATGGAACATGGTGCAGAAGGTTGCTCATCTACTGCCAAGCGGGACAGCAAGAGTCGAAAT GGCTGGTCATCAGGCTTCCAGGTGCACCAGCTGGGTAAAGTCCTGAGGAAAGCTTGGGCT GAGGAGAATGGTTGCCCCAGTGAGGCCTGCAAAGATGAGATTGAAGATTCCTGCTGTCAA AGTGATTCAGCTTTACACGATAAGGATCAAGCTGCACATGTTGTTTCCCACGAGCTTGAT CTTAATGAATCCTCAGTCCCTGACCTAAACGCTGAGGTGGTGATGCCTACAGAGAGCTTC CGGAACGAGAATATATGTAGTCCAGGAAAGAATGGATTGAGAAAGTCGAATGGTTCCAGT GATTCTGATATTTGTGCTGAGGGGCTTGTTGGAGAGGCACCGGCCATGGAATCCCGATCA CAAAGTCGTAAACAGACATCAGATTTAGAGCAGGAAACTTATTTAGAGCAGGAAACTGGT GCTGATGATAGCACTTTGCTCATCAGCCCACCCAAGCACTTCTCCCGTAGGTTAGGTCAG TTAGATGATAACTACGAATACTGCGTCAAGGTTATACGGTGGTTGGAATGTTCTGGACAC ATCGAAAAGGACTTTAGGATGAAATTTCTAACTTGGTTTAGCTTGAGATCGACGGAGCAG GAACGGAGGGTTGTGATCACTTTTATCCGCACCCTTGCTGATGATCCCAGTAGCTTGGCA GGACAGCTCCTGGATTCCTTCGAAGAAATTGTATCCAGTAAGAAGCCGAGAACTGGTTTC TGCAGTAAGTTATGGCACTAATCCAGCCAGGTGAAAGCCGAAATCGCTATCGTATATTCT TGCAAGGGGAAAAGTTGACGGGGCCACAATTTTCCGCTTTGCTGAAATACTACTTTTAAC TACTGATAAATGTATATGTAGTTTAGTTTTGATGCTGTGCTTGGCGCCCAGCCAGCCATT ACCCATGATGATATATTGGAACTTGAATGTCTGTATCTGGTTTACTGGGAAATGAATACC CTTATCAT