Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0527900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:20814294:20816272:1 gene:Os12g0527900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0527900-01)
Sequence

ATGCTGATGTCGCGGCGGCTCGTGCCCGCCGCCGCCGCGGCGAGGATGGCGTCGTCGTCG
TCGTCGGCGGCGGCGGCGGCGGTGTCTGGTGGTGCGGAAGGTGGAGGTGGGGAGGGGAGG
GGAGGGGACACGCTGGGGAGGAGGCTGCTGAAGCTGATCTACCCGAAGCGGAGCGCGGCG
GTGGTGCTGCGCCGGTGGGCGGAGGAGGGGCGCACCGTGCAGAAGTACCAGCTCAACCGC
GTCGTCCGCGAGCTCCGCAAGTACCGCCGCTTCAAGCACGCCCTCGAGATATGCGAGTGG
ATGAGGACGCAGCCGGAGATGAGGCTGCTTCCCGGGGACCACGCCGTGCACCTCGACCTC
GTGGCCAAGGTCCGGGGGCTCCCCAGCGCCGAGAAGTTCTTCGAGGACATGCCGGAGCGC
GCCAAGGGGCCGTCCACCTGCAACGCGCTGCTCCACGCCTACGTGCAGCACGGCCGGCGT
GACAAGGCGGAGGCAATGCTGGAGGAGATGGCCAAGGCTGGGTACCTCACCTGCGCGCTG
CCGTTCAACCACATGATGTCGCTCTACATGTCGAGCGGCGAGCTTGAGAAGGTCCCGGAG
ATGATCAAGGAGCTCAGGAGGTACACCATCCCTGACCTGGTCACCTACAACATATGGCTG
ACATACTGCTCGAAGAAGAACAGCGTGAAAGCCGCGGAGAAGGTCTACGATCTGATGAAG
GATGAGAGGGTGGTTCCTGACTGGATGACATTCAGCTTGCTGGGAAGCATTTACATCAAT
GCCGGGCTTCATGTCAAAGGCCGGGACGCGCTGGTGGAGATGGAGAAGAGGGCCTCTCGG
AAGGAGAGAGCCGCGTACTCCTCATTGCTCACCCTGTATGCAAGCTTGTCGGATAGAGGT
AACTTGGACAGGGTGTGGAGGAAGATGAGAGAAACCTTCAGAAAGTTCAGTGACACCGAG
TACAAGTGCATGCTCACTTCGCTCACAAGGTTTGGCGATATCGCAGAAGCAGAGAGCTTT
TACAGCGAATGGGAGTCCGCCTCAGGAACACGCGATTCGAGGATCCCGAACACGATCCTC
GCATTTTACATCAAGAACGGCATGATGGAAAAGGCTGAGGGTTTCCTCGATCACATTGTG
CAGAAGGGTGTCAAGCCAAGCTATAGCACTTGGGAACTGTTTGTCTGGGGCTATCTCAGC
GATGGCAGAATGGACAAAGTTCTTGAGTGCCTGAAGAAAGCCCTGTCATGTCTGGAGAAA
TGGGATCCAAACCCTCAACTCGCGACGGCGATATACTCTCAGATTGAGGAGAAAGGCGAC
ATCGAAGCTGCAGAGAAGCTCCTGGTCATGTTCAGAGAAGCAGGATATGTCACGACCGAG
ATCTATAACTCGGTCTTGCGCACTTATGCGAAGGCTGAGCTGATGCCGCTGATAGTTGAT
GAACGCATGGATCAGGATAAGGTCTCAATGGACGATGAAACAAGGAGTTTGCTGAGATTG
ACAAGCAAATACCCGATTGGTGAAGTTTCGACATTGATGTCTTGA

Peptide Sequence

PEP ID

Os12t0527900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:20814294:20816272:1 gene:Os12g0527900 transcript:Os12t0527900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0527900-01)
Sequence

MLMSRRLVPAAAAARMASSSSSAAAAAVSGGAEGGGGEGRGGDTLGRRLLKLIYPKRSAA
VVLRRWAEEGRTVQKYQLNRVVRELRKYRRFKHALEICEWMRTQPEMRLLPGDHAVHLDL
VAKVRGLPSAEKFFEDMPERAKGPSTCNALLHAYVQHGRRDKAEAMLEEMAKAGYLTCAL
PFNHMMSLYMSSGELEKVPEMIKELRRYTIPDLVTYNIWLTYCSKKNSVKAAEKVYDLMK
DERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRASRKERAAYSSLLTLYASLSDRG
NLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSEWESASGTRDSRIPNTIL
AFYIKNGMMEKAEGFLDHIVQKGVKPSYSTWELFVWGYLSDGRMDKVLECLKKALSCLEK
WDPNPQLATAIYSQIEEKGDIEAAEKLLVMFREAGYVTTEIYNSVLRTYAKAELMPLIVD
ERMDQDKVSMDDETRSLLRLTSKYPIGEVSTLMS

Transcript Sequence

Transcript ID

Os12t0527900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:20814294:20816272:1 gene:Os12g0527900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0527900-01)
Sequence

AGAGTGGTGAAGCGTTGGAAGGGATGCTGATGTCGCGGCGGCTCGTGCCCGCCGCCGCCG
CGGCGAGGATGGCGTCGTCGTCGTCGTCGGCGGCGGCGGCGGCGGTGTCTGGTGGTGCGG
AAGGTGGAGGTGGGGAGGGGAGGGGAGGGGACACGCTGGGGAGGAGGCTGCTGAAGCTGA
TCTACCCGAAGCGGAGCGCGGCGGTGGTGCTGCGCCGGTGGGCGGAGGAGGGGCGCACCG
TGCAGAAGTACCAGCTCAACCGCGTCGTCCGCGAGCTCCGCAAGTACCGCCGCTTCAAGC
ACGCCCTCGAGATATGCGAGTGGATGAGGACGCAGCCGGAGATGAGGCTGCTTCCCGGGG
ACCACGCCGTGCACCTCGACCTCGTGGCCAAGGTCCGGGGGCTCCCCAGCGCCGAGAAGT
TCTTCGAGGACATGCCGGAGCGCGCCAAGGGGCCGTCCACCTGCAACGCGCTGCTCCACG
CCTACGTGCAGCACGGCCGGCGTGACAAGGCGGAGGCAATGCTGGAGGAGATGGCCAAGG
CTGGGTACCTCACCTGCGCGCTGCCGTTCAACCACATGATGTCGCTCTACATGTCGAGCG
GCGAGCTTGAGAAGGTCCCGGAGATGATCAAGGAGCTCAGGAGGTACACCATCCCTGACC
TGGTCACCTACAACATATGGCTGACATACTGCTCGAAGAAGAACAGCGTGAAAGCCGCGG
AGAAGGTCTACGATCTGATGAAGGATGAGAGGGTGGTTCCTGACTGGATGACATTCAGCT
TGCTGGGAAGCATTTACATCAATGCCGGGCTTCATGTCAAAGGCCGGGACGCGCTGGTGG
AGATGGAGAAGAGGGCCTCTCGGAAGGAGAGAGCCGCGTACTCCTCATTGCTCACCCTGT
ATGCAAGCTTGTCGGATAGAGGTAACTTGGACAGGGTGTGGAGGAAGATGAGAGAAACCT
TCAGAAAGTTCAGTGACACCGAGTACAAGTGCATGCTCACTTCGCTCACAAGGTTTGGCG
ATATCGCAGAAGCAGAGAGCTTTTACAGCGAATGGGAGTCCGCCTCAGGAACACGCGATT
CGAGGATCCCGAACACGATCCTCGCATTTTACATCAAGAACGGCATGATGGAAAAGGCTG
AGGGTTTCCTCGATCACATTGTGCAGAAGGGTGTCAAGCCAAGCTATAGCACTTGGGAAC
TGTTTGTCTGGGGCTATCTCAGCGATGGCAGAATGGACAAAGTTCTTGAGTGCCTGAAGA
AAGCCCTGTCATGTCTGGAGAAATGGGATCCAAACCCTCAACTCGCGACGGCGATATACT
CTCAGATTGAGGAGAAAGGCGACATCGAAGCTGCAGAGAAGCTCCTGGTCATGTTCAGAG
AAGCAGGATATGTCACGACCGAGATCTATAACTCGGTCTTGCGCACTTATGCGAAGGCTG
AGCTGATGCCGCTGATAGTTGATGAACGCATGGATCAGGATAAGGTCTCAATGGACGATG
AAACAAGGAGTTTGCTGAGATTGACAAGCAAATACCCGATTGGTGAAGTTTCGACATTGA
TGTCTTGAGATGTTGCAAGTTCGGGCAATGAATTTTCAGTCCTACAGGATGCAATGTGCT
GTTAATTGATTTCCAATCACAAGTTATTGCTCCCCTGTATTTGCAGTTTTGAACTCGAAA
GCAAAGTAGCGAGGATAGACTGATACAAGGTTAGTGGGCTGGAATTTGTGAATATTAGCA
AGTTCGGTCATGAGTCTGTATAAGCACTACCTGCTCCCTTGCCTTCTGACTATCTGGCGC
GGCTAGATAGCACAATTCGCAACAAGTTACTGCTCTTTGTTTTTGAAAACAGATACAGAT
AACAAATCGTGCGTAAATTTGCATTGTG