Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0527800-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:20806284:20809424:-1 gene:Os12g0527800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0527800-01);Hypothetical conserved gene. (Os12t0527800-02)
Sequence

GCATATGTAATGAAAAATGATGGTAGAAACACACTCAAATTCTCTTTCAAAAGCAACAGT
ACTAAGCCTGCATTAGATTCATCTGAACAAGAGAAGAATGCTATCAAGAGCTCAGGGTCA
AATAAGAAGCATTCCAAGAAGAAAGGGAATCAAAATAATAAAACAGTTAGCGAGCAGGAT
GAGATATTTTTGGAGAAAAGGAATGAAACTAAATCATTGGGTAGTTTGGGAGATCAAATT
GCAGATGTTACTCGTGATAAGAGTTCATTTAAAAATGATGCCGATGCGTTTGTGCTGTCT
TCAGCTCAAAGTGCAGAGAAGGCTTTGAAATTACAATCTGCCAAAGCTGCAGCACATAAT
GCTGATATGATACCCAAAGTCAAGATTAAAGGAACTAAGGTTCCGAGTTTGCATTTCAAG
GATGTAGGCGAGGAAAATGCTGCCAAGAGTGACACAGGGAAAGGTACCAAGTTGGTTATT
CATATCGGTTCACGACACAAAAGTAGGAGTGGCTCTCCCAAGTCTGAAATGTCCAATTCT
CAGAAAGAGCAAGAGCTGGTTTCAATGCATGGAGGGAAAGTTGATGTGACAAGCCAGTTC
AAAAGCTCTAGAAGTGAAATAAAAGAAAAAAGTGTAATGAAGCTAGTTAGAGAGACTGGA
GTACAACAAAATAGCCTTCTAGGAGATCTAGGTGCTTCAAAAAAGCATGCAACCGGAAAA
AGGAGCAATGCTATAGTTTCTGCAATGGAAAATGCAAGTGAAAGTGGTACCAGAAGCAGA
TCGTTTGGACAAAAACAATCTGTTAATCATCTGACTGAGAACCAGGGGAATGCTTCATTT
TCTGTGAACAACTCTCCTGACAGCTTGAAGCCATCATTGCTCAAGCTTAAATTTAAACGT
CCAATTTTTGAGCAGCCAAGCACTCAGTCTTCTCAACCAGAGGAGCCGGGCACCTGGGCT
TCACCGCAAGAGGAGTTAAATGTTGCTAAAGGCCAGAGATCAAAGAGGAAGAGACCTTCA
TTAGACAAGATGGATGGTTCGGAAAGTAAGGCTCCAGCTGCCAAGAGACATGAGCAGAGC
ACAGGAGAAGAAGCAATGGATGCGAACTGGATCCTGCGCAAGTTGGGCAAGGATGCGATT
GGGAAGAGGATTGAGGTCCAGCTAGCTTCTGATGGCAAATGGCATCAGGGGGTAGTCTCG
AATGTAATCAATGGCACTTTGTGCCTTCAGTTAGATAATGGTAGGTCTGAGAACATAGAG
CTGGGAAAGCGGGCAATCCGCTTGATAGCACAAAGGTCAAAGAGCGGAAAGCGATGA

Peptide Sequence

PEP ID

Os12t0527800-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:20806284:20809424:-1 gene:Os12g0527800 transcript:Os12t0527800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0527800-01);Hypothetical conserved gene. (Os12t0527800-02)
Sequence

AYVMKNDGRNTLKFSFKSNSTKPALDSSEQEKNAIKSSGSNKKHSKKKGNQNNKTVSEQD
EIFLEKRNETKSLGSLGDQIADVTRDKSSFKNDADAFVLSSAQSAEKALKLQSAKAAAHN
ADMIPKVKIKGTKVPSLHFKDVGEENAAKSDTGKGTKLVIHIGSRHKSRSGSPKSEMSNS
QKEQELVSMHGGKVDVTSQFKSSRSEIKEKSVMKLVRETGVQQNSLLGDLGASKKHATGK
RSNAIVSAMENASESGTRSRSFGQKQSVNHLTENQGNASFSVNNSPDSLKPSLLKLKFKR
PIFEQPSTQSSQPEEPGTWASPQEELNVAKGQRSKRKRPSLDKMDGSESKAPAAKRHEQS
TGEEAMDANWILRKLGKDAIGKRIEVQLASDGKWHQGVVSNVINGTLCLQLDNGRSENIE
LGKRAIRLIAQRSKSGKR

Transcript Sequence

Transcript ID

Os12t0527800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:20806284:20809424:-1 gene:Os12g0527800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0527800-01);Hypothetical conserved gene. (Os12t0527800-02)
Sequence

GTGCATATGTAATGAAAAATGATGGTAGAAACACACTCAAATTCTCTTTCAAAAGCAACA
GTACTAAGCCTGCATTAGATTCATCTGAACAAGAGAAGAATGCTATCAAGAGCTCAGGGT
CAAATAAGAAGCATTCCAAGAAGAAAGGGAATCAAAATAATAAAACAGTTAGCGAGCAGG
ATGAGATATTTTTGGAGAAAAGGAATGAAACTAAATCATTGGGTAGTTTGGGAGATCAAA
TTGCAGATGTTACTCGTGATAAGAGTTCATTTAAAAATGATGCCGATGCGTTTGTGCTGT
CTTCAGCTCAAAGTGCAGAGAAGGCTTTGAAATTACAATCTGCCAAAGCTGCAGCACATA
ATGCTGATATGATACCCAAAGTCAAGATTAAAGGAACTAAGGTTCCGAGTTTGCATTTCA
AGGATGTAGGCGAGGAAAATGCTGCCAAGAGTGACACAGGGAAAGGTACCAAGTTGGTTA
TTCATATCGGTTCACGACACAAAAGTAGGAGTGGCTCTCCCAAGTCTGAAATGTCCAATT
CTCAGAAAGAGCAAGAGCTGGTTTCAATGCATGGAGGGAAAGTTGATGTGACAAGCCAGT
TCAAAAGCTCTAGAAGTGAAATAAAAGAAAAAAGTGTAATGAAGCTAGTTAGAGAGACTG
GAGTACAACAAAATAGCCTTCTAGGAGATCTAGGTGCTTCAAAAAAGCATGCAACCGGAA
AAAGGAGCAATGCTATAGTTTCTGCAATGGAAAATGCAAGTGAAAGTGGTACCAGAAGCA
GATCGTTTGGACAAAAACAATCTGTTAATCATCTGACTGAGAACCAGGGGAATGCTTCAT
TTTCTGTGAACAACTCTCCTGACAGCTTGAAGCCATCATTGCTCAAGCTTAAATTTAAAC
GTCCAATTTTTGAGCAGCCAAGCACTCAGTCTTCTCAACCAGAGGAGCCGGGCACCTGGG
CTTCACCGCAAGAGGAGTTAAATGTTGCTAAAGGCCAGAGATCAAAGAGGAAGAGACCTT
CATTAGACAAGATGGATGGTTCGGAAAGTAAGGCTCCAGCTGCCAAGAGACATGAGCAGA
GCACAGGAGAAGAAGCAATGGATGCGAACTGGATCCTGCGCAAGTTGGGCAAGGATGCGA
TTGGGAAGAGGATTGAGGTCCAGCTAGCTTCTGATGGCAAATGGCATCAGGGGGTAGTCT
CGAATGTAATCAATGGCACTTTGTGCCTTCAGTTAGATAATGGTAGGTCTGAGAACATAG
AGCTGGGAAAGCGGGCAATCCGCTTGATAGCACAAAGGTCAAAGAGCGGAAAGCGATGAA
CCCATTTTGCGCCTGCCTCCCTGTTCTTGCTCTCAGTCAACTTCCTGCCACCAGGGTAGT
AAGCAGACCTCTCCAGGCTCCAGCATTTGGATCGTCGCAGTCTCTGATTCATGGGAGATT
GGGAGGTCTGAAGGTCTGCCGTTCTTGCTGCCTTAAGCTGACTGGATGAGACGTAGAAAT
GCAACATCATCCGTTGCGCGGTGTCTCACTAGCCTAGCATGTAACAGACTAGTTTTTTTT
TTTGTCCTGCTGCATGAAGCGCATTGGCTTCATTTTGACTTCTGGTAGTGTAGGAACAAA
CAACTGGGAAGGCTTTTTAGGGGCCACCCTGGATGTAGAAGAAATGCCTGATGATGGCCA
TGTACATGTAGCTGTAGCTGCTGAATGAGTTCTTTTTTTTAACCAGTTTACCCAGAATTC
CCTGTG