Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0520200-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:20292893:20295400:1 gene:Os12g0520200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Phenylalanine ammonia-lyase 03, Tyrosine Aminomutase 1 description:Similar to phenylalanine ammonia-lyase. (Os12t0520200-01)
Sequence	ATGGAGTGTGAGACCGGTCTGGTCGACCGTCCCCTCAACGGCGACCCCTTGTACTGGGGC AAGGCGGCGGAGGGTCTTGCGGGGAGCCACCTCGACGAGGTGAAGAGGATGGTGGTGGAG TACCGCGCGCCGCTGGTGAAGATCGACGGCGCCATGCTCAGCGTCGCCAAGGTGGCAGCC GTCGCTGGCGAGGCCGCCCGGGTGCAGGTGGTGCTGGACGAATCCGCACGACCCCGCCTG GAGGCTAGTCGCGAGTGGGTCTTCGACAGCACCATGAACGGCACCGACACGTACGGCGTC ACCACCGGCTTCGGAGGTGCCGCCCACCGCCGCACCAAGGAGTTCGCCGCGCTCCAGAAA GAGCTGATCCGCCGCAGCGACGGCTACACGCTGCCGACGGAGGTCACTCGCGCAGCCATG CTGGTGCGCATCAACACCCTCACCCAGGGCTACTCGGGCATCCGCTTCGAGATCCTCGAG GCCATCGCCAAGCTGCTCAACGCCAACGTGACGCCGTGCCTGCCGCTCCGGGGCACCATC ACCGCGTCCGGCGACCTGGTCCCGCTGTCCTACATCGCCGGCCTCATCACCGGCCGCCAG AACTCCGCGGCGGTGGCCCCGGACGGCAGCAAGGTGGACGCCGCTGAGGCGTTCAGGATC GCCGGCATCGAGCACGGGTTCTTCGCGTTGCAGCCCAAGGAAGGGCTCGCCATCGTCAAC GGCACGGCCGTGGGCTCCGGCCTCGCGGCGATCGTGCTCTTCGAGGCCAACGTCCTGGCC GTCCTTGCCGAGGTCCTCTCGGCGGTGTACTGCGAGGTGATGGCCGGCAATCCGGAGTAC ACCGACCACCTCATCCACGCGCTGAAGCACCACCCTGGACAGATCGAAGCTGCGGCCATC ATGGAGCACATACTGGAAGGCAGCTCCTACATGAGGCTTGCCAAGGAGCAGGGCGAGCTT GACCGGTTGACGAAGCTGAGGCAGGACAGGTACGCCATCCGCACGGCGCCGCAGTGGCTC GGCCCGCAGGTCGAGGTCATCCGCTTCGCCACCAAGTCGATCGAGCGGGAGATCAACTCC GTCAACGACAACCCGGTCATCGACGTCGCCCGCCGCAAGGCGCTCCACGGCGGCAACTTC CAGGGCACTCCCATCGGGGTGTCCATGGACAACACTCGTCTCGCCATCGCTGCCATCGGC AGGCTCATGTTCTCGCAGTTCTCCGAGCTTGCCAGTAGCTTCTACAGCAACGGCCTTCCC TCCAATCTGTCCGGCGGGCGCAACCCGAGCTTGGACTACGGTTTCAATGGCGCCGAGGTC GCCATGGCGTCCTACTGCTCTGAGCTGCAGTTCCTCGCCAACCCGGTGACCAACCATGTG CAGACCGCGGAGCAGCACAACCAGAGCGTCAACTCTCTCGGCCTCATCTCCTCCAGGATG ACAGCAGAGGCCGTCACCATCCTGAAGCTCATGTCCTCTACTTTCCTCATCGCACTGTGC CAGGCCGTCGACCTGCGCCAACTCGAGGAGAGCATCAAGGCCGCTGTTAACAAGTGCGTG ACAAATGTCGCCAAGAAATCCCTGGCCATGGACGATGACGATCTGCTAGCGCTGCTCGGC GCTGCTATCGACCGCGTGGCGGTGTTCACGTACGCAGAAGACCCATGCAGATCCAGCTTG CCACTCATACAGAAGCTCCGCGCGGTGCTCATGGACCATGCGCTGGCCAACGGTGACAAC CAGCTGGCCAAGGTGGCTGAGTTCGAGCAGCAGCTCCGCGCGGTGCTCCACGACGAGGTG GAGGCCGCACGCGCGGCTGTGGAGAGCGGCACGGCCCCGAACAGGATCACCCAGTGTCGC TCGTACCCGCTGTACAGGTTCGTGCGCAAGGAGCTCGGCGCCGAGTACCTGACCGGCGAG AAGACGCGGTCGCCCGGGGAGGAGGTGGACAAGGTGGTGATCGCCATGAACCAGCACAAG CACATCAACCCACTGCTGGAGTGCCTCAGCGAGTGGAAAGGCGCGCCCCTGCCACTTAAT TAG

Peptide Sequence

PEP ID	Os12t0520200-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:20292893:20295400:1 gene:Os12g0520200 transcript:Os12t0520200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Phenylalanine ammonia-lyase 03, Tyrosine Aminomutase 1 description:Similar to phenylalanine ammonia-lyase. (Os12t0520200-01)
Sequence	MECETGLVDRPLNGDPLYWGKAAEGLAGSHLDEVKRMVVEYRAPLVKIDGAMLSVAKVAA VAGEAARVQVVLDESARPRLEASREWVFDSTMNGTDTYGVTTGFGGAAHRRTKEFAALQK ELIRRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEAIAKLLNANVTPCLPLRGTI TASGDLVPLSYIAGLITGRQNSAAVAPDGSKVDAAEAFRIAGIEHGFFALQPKEGLAIVN GTAVGSGLAAIVLFEANVLAVLAEVLSAVYCEVMAGNPEYTDHLIHALKHHPGQIEAAAI MEHILEGSSYMRLAKEQGELDRLTKLRQDRYAIRTAPQWLGPQVEVIRFATKSIEREINS VNDNPVIDVARRKALHGGNFQGTPIGVSMDNTRLAIAAIGRLMFSQFSELASSFYSNGLP SNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPVTNHVQTAEQHNQSVNSLGLISSRM TAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAVNKCVTNVAKKSLAMDDDDLLALLG AAIDRVAVFTYAEDPCRSSLPLIQKLRAVLMDHALANGDNQLAKVAEFEQQLRAVLHDEV EAARAAVESGTAPNRITQCRSYPLYRFVRKELGAEYLTGEKTRSPGEEVDKVVIAMNQHK HINPLLECLSEWKGAPLPLN

Transcript Sequence

Transcript ID	Os12t0520200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:20292893:20295400:1 gene:Os12g0520200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Phenylalanine ammonia-lyase 03, Tyrosine Aminomutase 1 description:Similar to phenylalanine ammonia-lyase. (Os12t0520200-01)
Sequence	AACAAGCTCCACCGCAAAGATCCTCTGTTAGCTGGACGACCTGTGGACTGCGGTACGTGG CGCTGCGAGCAATGGAGTGTGAGACCGGTCTGGTCGACCGTCCCCTCAACGGCGACCCCT TGTACTGGGGCAAGGCGGCGGAGGGTCTTGCGGGGAGCCACCTCGACGAGGTGAAGAGGA TGGTGGTGGAGTACCGCGCGCCGCTGGTGAAGATCGACGGCGCCATGCTCAGCGTCGCCA AGGTGGCAGCCGTCGCTGGCGAGGCCGCCCGGGTGCAGGTGGTGCTGGACGAATCCGCAC GACCCCGCCTGGAGGCTAGTCGCGAGTGGGTCTTCGACAGCACCATGAACGGCACCGACA CGTACGGCGTCACCACCGGCTTCGGAGGTGCCGCCCACCGCCGCACCAAGGAGTTCGCCG CGCTCCAGAAAGAGCTGATCCGCCGCAGCGACGGCTACACGCTGCCGACGGAGGTCACTC GCGCAGCCATGCTGGTGCGCATCAACACCCTCACCCAGGGCTACTCGGGCATCCGCTTCG AGATCCTCGAGGCCATCGCCAAGCTGCTCAACGCCAACGTGACGCCGTGCCTGCCGCTCC GGGGCACCATCACCGCGTCCGGCGACCTGGTCCCGCTGTCCTACATCGCCGGCCTCATCA CCGGCCGCCAGAACTCCGCGGCGGTGGCCCCGGACGGCAGCAAGGTGGACGCCGCTGAGG CGTTCAGGATCGCCGGCATCGAGCACGGGTTCTTCGCGTTGCAGCCCAAGGAAGGGCTCG CCATCGTCAACGGCACGGCCGTGGGCTCCGGCCTCGCGGCGATCGTGCTCTTCGAGGCCA ACGTCCTGGCCGTCCTTGCCGAGGTCCTCTCGGCGGTGTACTGCGAGGTGATGGCCGGCA ATCCGGAGTACACCGACCACCTCATCCACGCGCTGAAGCACCACCCTGGACAGATCGAAG CTGCGGCCATCATGGAGCACATACTGGAAGGCAGCTCCTACATGAGGCTTGCCAAGGAGC AGGGCGAGCTTGACCGGTTGACGAAGCTGAGGCAGGACAGGTACGCCATCCGCACGGCGC CGCAGTGGCTCGGCCCGCAGGTCGAGGTCATCCGCTTCGCCACCAAGTCGATCGAGCGGG AGATCAACTCCGTCAACGACAACCCGGTCATCGACGTCGCCCGCCGCAAGGCGCTCCACG GCGGCAACTTCCAGGGCACTCCCATCGGGGTGTCCATGGACAACACTCGTCTCGCCATCG CTGCCATCGGCAGGCTCATGTTCTCGCAGTTCTCCGAGCTTGCCAGTAGCTTCTACAGCA ACGGCCTTCCCTCCAATCTGTCCGGCGGGCGCAACCCGAGCTTGGACTACGGTTTCAATG GCGCCGAGGTCGCCATGGCGTCCTACTGCTCTGAGCTGCAGTTCCTCGCCAACCCGGTGA CCAACCATGTGCAGACCGCGGAGCAGCACAACCAGAGCGTCAACTCTCTCGGCCTCATCT CCTCCAGGATGACAGCAGAGGCCGTCACCATCCTGAAGCTCATGTCCTCTACTTTCCTCA TCGCACTGTGCCAGGCCGTCGACCTGCGCCAACTCGAGGAGAGCATCAAGGCCGCTGTTA ACAAGTGCGTGACAAATGTCGCCAAGAAATCCCTGGCCATGGACGATGACGATCTGCTAG CGCTGCTCGGCGCTGCTATCGACCGCGTGGCGGTGTTCACGTACGCAGAAGACCCATGCA GATCCAGCTTGCCACTCATACAGAAGCTCCGCGCGGTGCTCATGGACCATGCGCTGGCCA ACGGTGACAACCAGCTGGCCAAGGTGGCTGAGTTCGAGCAGCAGCTCCGCGCGGTGCTCC ACGACGAGGTGGAGGCCGCACGCGCGGCTGTGGAGAGCGGCACGGCCCCGAACAGGATCA CCCAGTGTCGCTCGTACCCGCTGTACAGGTTCGTGCGCAAGGAGCTCGGCGCCGAGTACC TGACCGGCGAGAAGACGCGGTCGCCCGGGGAGGAGGTGGACAAGGTGGTGATCGCCATGA ACCAGCACAAGCACATCAACCCACTGCTGGAGTGCCTCAGCGAGTGGAAAGGCGCGCCCC TGCCACTTAATTAGCTCAACTACGTACGTACAAATAAGAGAAGACGAGGTGTACGTCTGA CGGATGAAAAATTATTTAAAGCAAAAGTACTATCCTACTATATATACCCAATAATTCACG CGGCGGGCCGGGGCGTAAGTGAATAAAGAATAATGGACTATATATAAATGTTTGACCACT TATTATAATCATGGTGTACTTGTGTCTTACGTTAAGAAAGCTGCTTATATATAAATAAAA GTCATTTTAATT