Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0517000-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:20093814:20095262:1 gene:Os12g0517000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Os_F0691 description:Cyclin-like F-box domain containing protein. (Os12t0517000-00)
Sequence

ATGGAGGATCTTCCGGGTGCAGCACTTGCAGAGATCATGAAGAGGATTACAAGGACAAGT
GATCTAAGTTCTCTTTCTCTTGTGTCGAAGCGGCTCTACACCATTGATGCGGAGCACAGG
AGTACTATCCGTGTTGGTCGTGGCCTTTGGCCTGCTAAAGAAGCCTTGTTAACACTCTGT
TCCCGATTTTCCAATCTGCGGAAAGTTGAGATCAATTACCATGATTCGACACGTGGCGAT
GGGAATCAGATCGACAACCAAGGCCTTCTTACGCTTTCAACTTGCTGTCCATTGCTGACT
GATCTCATTTTAAGCTTCTGCTATTACATCGATGACTCTGGTCTAGCTTACCTAACTGAT
TGCAAGAAGTTAGTTTCCCTCAGGCTGAACTCTGCAAAAAATATAACATCAAGTGGGCTT
CTCGTTGTGGCTATTGGTTGCAAGAATCTATCTGGTCTTCACCTCATCAATTGCAATAAA
ATCAGTGGTAACCCTGAATGGCTGAAGTACCTTGGCAGTGATGGATCATTGGAAGAACTT
GTTGTAAAGAATTGTGGAGGAATCAGCCAGTACGACCTCCTATTGTTTGGTCCAGGATGG
ATGAAGCTCGAGAGGTTTGTGTTTGAGGTCAGTAATCTTTACAACATATTGAGACTTCGA
GATCCCTCATTCGTGGCGAACTACCAGCGTAGCTATGATTTCTGCTGCGAGAGTTTGAAG
GATTTGCGTTTGAGAGGGATTGCAACCGTGGAAGAAATAGGACTTCGTTCTCTTCTGGGA
AAATGCAAATCATTACAGATACTTTGCCTTCATTTTGTTCTTGGTCTAACTGACAGTGAC
ATGATCACACTCTCCCAGAACTGCAGCAACCTCAAAAGCATCTCTCTTCAGCTTGAGCCT
GTTGTCGGTGTAGGACCTCAAGGTAGAGTTTTCAGGATGCCATTGACTGATGTAAGCCTC
AAGGCTCTAGCCCTCGGGTGCCGTATGCTTCAGATTGTTGAGCTCGCAGTGTATTCCCGT
CACACTTCTTATCCAGAAATTGGCTTCAGTCAAGAGGGCCTTGCGACGCTCTTCCAGTCT
TGCCCAATTCGTGAACTTGTTCTGTGTGGTGCCAATATCTTCGATGATGAGGTGATGAAG
GCCCTCTCATCTGCACAATTCCTGGAGACTCTCAAGCTTATGGATTGCAAACGGATAACT
GATGCCGGGATGCGCTTGCTTGCCAATAGTTCATCTTTGGTTAACCTCACATTGCAGGAT
TGTCGCGGTTTTACCGATGATGGAGTCAGTGAGGTCGTACGTGCACGGAATTTGGATTCT
CTGATTGTTCAAGGCTGTCGCGTTTCTTGGAAAGCTGTGAAGGGGGCTGCCAAATCTGTT
CGCTATGATCGTAATTGCCCGGTCTATGGCCGTCTAAGTAGATCGAGCATGATATCCACT
CTGGATTAG

Peptide Sequence

PEP ID

Os12t0517000-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:20093814:20095262:1 gene:Os12g0517000 transcript:Os12t0517000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Os_F0691 description:Cyclin-like F-box domain containing protein. (Os12t0517000-00)
Sequence

MEDLPGAALAEIMKRITRTSDLSSLSLVSKRLYTIDAEHRSTIRVGRGLWPAKEALLTLC
SRFSNLRKVEINYHDSTRGDGNQIDNQGLLTLSTCCPLLTDLILSFCYYIDDSGLAYLTD
CKKLVSLRLNSAKNITSSGLLVVAIGCKNLSGLHLINCNKISGNPEWLKYLGSDGSLEEL
VVKNCGGISQYDLLLFGPGWMKLERFVFEVSNLYNILRLRDPSFVANYQRSYDFCCESLK
DLRLRGIATVEEIGLRSLLGKCKSLQILCLHFVLGLTDSDMITLSQNCSNLKSISLQLEP
VVGVGPQGRVFRMPLTDVSLKALALGCRMLQIVELAVYSRHTSYPEIGFSQEGLATLFQS
CPIRELVLCGANIFDDEVMKALSSAQFLETLKLMDCKRITDAGMRLLANSSSLVNLTLQD
CRGFTDDGVSEVVRARNLDSLIVQGCRVSWKAVKGAAKSVRYDRNCPVYGRLSRSSMIST
LD

Transcript Sequence

Transcript ID

Os12t0517000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:20093814:20095262:1 gene:Os12g0517000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Os_F0691 description:Cyclin-like F-box domain containing protein. (Os12t0517000-00)
Sequence

ATGGAGGATCTTCCGGGTGCAGCACTTGCAGAGATCATGAAGAGGATTACAAGGACAAGT
GATCTAAGTTCTCTTTCTCTTGTGTCGAAGCGGCTCTACACCATTGATGCGGAGCACAGG
AGTACTATCCGTGTTGGTCGTGGCCTTTGGCCTGCTAAAGAAGCCTTGTTAACACTCTGT
TCCCGATTTTCCAATCTGCGGAAAGTTGAGATCAATTACCATGATTCGACACGTGGCGAT
GGGAATCAGATCGACAACCAAGGCCTTCTTACGCTTTCAACTTGCTGTCCATTGCTGACT
GATCTCATTTTAAGCTTCTGCTATTACATCGATGACTCTGGTCTAGCTTACCTAACTGAT
TGCAAGAAGTTAGTTTCCCTCAGGCTGAACTCTGCAAAAAATATAACATCAAGTGGGCTT
CTCGTTGTGGCTATTGGTTGCAAGAATCTATCTGGTCTTCACCTCATCAATTGCAATAAA
ATCAGTGGTAACCCTGAATGGCTGAAGTACCTTGGCAGTGATGGATCATTGGAAGAACTT
GTTGTAAAGAATTGTGGAGGAATCAGCCAGTACGACCTCCTATTGTTTGGTCCAGGATGG
ATGAAGCTCGAGAGGTTTGTGTTTGAGGTCAGTAATCTTTACAACATATTGAGACTTCGA
GATCCCTCATTCGTGGCGAACTACCAGCGTAGCTATGATTTCTGCTGCGAGAGTTTGAAG
GATTTGCGTTTGAGAGGGATTGCAACCGTGGAAGAAATAGGACTTCGTTCTCTTCTGGGA
AAATGCAAATCATTACAGATACTTTGCCTTCATTTTGTTCTTGGTCTAACTGACAGTGAC
ATGATCACACTCTCCCAGAACTGCAGCAACCTCAAAAGCATCTCTCTTCAGCTTGAGCCT
GTTGTCGGTGTAGGACCTCAAGGTAGAGTTTTCAGGATGCCATTGACTGATGTAAGCCTC
AAGGCTCTAGCCCTCGGGTGCCGTATGCTTCAGATTGTTGAGCTCGCAGTGTATTCCCGT
CACACTTCTTATCCAGAAATTGGCTTCAGTCAAGAGGGCCTTGCGACGCTCTTCCAGTCT
TGCCCAATTCGTGAACTTGTTCTGTGTGGTGCCAATATCTTCGATGATGAGGTGATGAAG
GCCCTCTCATCTGCACAATTCCTGGAGACTCTCAAGCTTATGGATTGCAAACGGATAACT
GATGCCGGGATGCGCTTGCTTGCCAATAGTTCATCTTTGGTTAACCTCACATTGCAGGAT
TGTCGCGGTTTTACCGATGATGGAGTCAGTGAGGTCGTACGTGCACGGAATTTGGATTCT
CTGATTGTTCAAGGCTGTCGCGTTTCTTGGAAAGCTGTGAAGGGGGCTGCCAAATCTGTT
CGCTATGATCGTAATTGCCCGGTCTATGGCCGTCTAAGTAGATCGAGCATGATATCCACT
CTGGATTAG