Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0516900-02
CDS Infomation	cds chromosome:IRGSP-1.0:12:20084217:20087066:1 gene:Os12g0516900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 657 description:Cyclin-like F-box domain containing protein. (Os12t0516900-01);Cyclin-like F-box domain containing protein. (Os12t0516900-02)
Sequence	ATGGAGGATCTTCCGGATGCCCTTATTGGAGAGATCGTCAAGAGGGTTAGCAGTACAAGT GATCTGAGCTCTCTTTCCCTTGTGTCAAAGCGTCTCTACAAAATTGAGGCAGAGAGCAGG CATACGATCCACATAAGCTGTAGCCTTGGACCAGCAACAGATGCCATAGTATCACTTTGT TCCCGATTTCACAACTTGTTGAAAGTAGATATCAATTACTCTGGTTGGACGCAGGACCAT GGGAACCAGTTGGACAACCATGGTCTCCGTATTCTTTCATCATACTGCCTCTCGCTGAGT GATATCACCTTAAGCTTCTGCTCATACATTGATGACACTGGTCTTGGTTATCTAGCATTT TGCAAGAAATTGATCACCCTCAGACTGAACTCTGCAACAAAAATAACATCAAGTGGACTT CTCGCTGTGGCTGTTGGTTGCAAGAATCTATCTGCTCTCCACCTCATCGATTGCAATAAA ATCAGTGGCGCCTTTGAATGGCTGAAGTACCTTGGCAGTGATGGATCACTGGAAGAACTT AAGGTGAAGAACTGTGTAGGAATCAACCAATACAGCCTTCTAATGTTTGGTCCAGGATGG ATGAAGCTCCAGAGGTTTGTGTTTGAGTTCAGAAATATTTACAGCATATTTGAATCTAAA GATCCCTCGTATGTGGCGAATTGCCAGTATAGATATGATTTCTCCTGTGAGAATTTGAAG CAATTGAGCTTGAGACGGATTGTGACCATGGAAGAAATAGGACTCCGCTCTCTCCTGGGA AAATGCAAATCACTAGAGAAACTTTGCCTTCATTTTGTTCTTGGTCTAACTGACAGTGAC ATGATTACACTCGCCCAGAACTGCAGCAACCTTAGAAGTATCTCACTTCAACTTGAGCCT GTCTTCTGTGAAGGACCTGAAGGTAGAGTCTGCAGGACGCCGTTGACTGATGAAAGCCTC AAGGCTTTAGCCGGGTGCCGTATGCTTCAAGTTGTTGAGCTCACAATGTTTGGTTGTGAT TATGCTTATCCAGAAATAGGCTTCACCCAAGAGGGCCTTATGATGTTTTTTCAGTCTTGC CCAATCCGTGATCTTGTGCTATGTGGCGCCAATATCTTTGATGATGAGGGGATGAAGGCC CTCTCATCTGCACAATTCCTGCAGACGCTCTAG

Peptide Sequence

PEP ID	Os12t0516900-02
PEP Infomation	pep chromosome:IRGSP-1.0:12:20084217:20087066:1 gene:Os12g0516900 transcript:Os12t0516900-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 657 description:Cyclin-like F-box domain containing protein. (Os12t0516900-01);Cyclin-like F-box domain containing protein. (Os12t0516900-02)
Sequence	MEDLPDALIGEIVKRVSSTSDLSSLSLVSKRLYKIEAESRHTIHISCSLGPATDAIVSLC SRFHNLLKVDINYSGWTQDHGNQLDNHGLRILSSYCLSLSDITLSFCSYIDDTGLGYLAF CKKLITLRLNSATKITSSGLLAVAVGCKNLSALHLIDCNKISGAFEWLKYLGSDGSLEEL KVKNCVGINQYSLLMFGPGWMKLQRFVFEFRNIYSIFESKDPSYVANCQYRYDFSCENLK QLSLRRIVTMEEIGLRSLLGKCKSLEKLCLHFVLGLTDSDMITLAQNCSNLRSISLQLEP VFCEGPEGRVCRTPLTDESLKALAGCRMLQVVELTMFGCDYAYPEIGFTQEGLMMFFQSC PIRDLVLCGANIFDDEGMKALSSAQFLQTL

Transcript Sequence

Transcript ID	Os12t0516900-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:20084217:20087066:1 gene:Os12g0516900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 657 description:Cyclin-like F-box domain containing protein. (Os12t0516900-01);Cyclin-like F-box domain containing protein. (Os12t0516900-02)
Sequence	GGAGAAGGGTTGGGGTTTTTGGCTTCGCGGAGGCGGCAAGGCGAGGCGAATCGCGAGGAG CGGAGGAGGAAGGGTAGGGTTTCGCGTCACGGAGGGGAGGGGATCGAGAGCTCCTCCTCC TCCGCCGTCTCCGCCTTTGCTCTCTTCCTTTCGCCTGTTGTTGCGAGAAGGCGGCCGCCA TTTTCTTGATTCCGACCTTGCAGCACTCAGATATCTGCTGAATCTGGTGATAGCGCAGCT TGTTCATCTGTATTTCACAATGGAGGATCTTCCGGATGCCCTTATTGGAGAGATCGTCAA GAGGGTTAGCAGTACAAGTGATCTGAGCTCTCTTTCCCTTGTGTCAAAGCGTCTCTACAA AATTGAGGCAGAGAGCAGGCATACGATCCACATAAGCTGTAGCCTTGGACCAGCAACAGA TGCCATAGTATCACTTTGTTCCCGATTTCACAACTTGTTGAAAGTAGATATCAATTACTC TGGTTGGACGCAGGACCATGGGAACCAGTTGGACAACCATGGTCTCCGTATTCTTTCATC ATACTGCCTCTCGCTGAGTGATATCACCTTAAGCTTCTGCTCATACATTGATGACACTGG TCTTGGTTATCTAGCATTTTGCAAGAAATTGATCACCCTCAGACTGAACTCTGCAACAAA AATAACATCAAGTGGACTTCTCGCTGTGGCTGTTGGTTGCAAGAATCTATCTGCTCTCCA CCTCATCGATTGCAATAAAATCAGTGGCGCCTTTGAATGGCTGAAGTACCTTGGCAGTGA TGGATCACTGGAAGAACTTAAGGTGAAGAACTGTGTAGGAATCAACCAATACAGCCTTCT AATGTTTGGTCCAGGATGGATGAAGCTCCAGAGGTTTGTGTTTGAGTTCAGAAATATTTA CAGCATATTTGAATCTAAAGATCCCTCGTATGTGGCGAATTGCCAGTATAGATATGATTT CTCCTGTGAGAATTTGAAGCAATTGAGCTTGAGACGGATTGTGACCATGGAAGAAATAGG ACTCCGCTCTCTCCTGGGAAAATGCAAATCACTAGAGAAACTTTGCCTTCATTTTGTTCT TGGTCTAACTGACAGTGACATGATTACACTCGCCCAGAACTGCAGCAACCTTAGAAGTAT CTCACTTCAACTTGAGCCTGTCTTCTGTGAAGGACCTGAAGGTAGAGTCTGCAGGACGCC GTTGACTGATGAAAGCCTCAAGGCTTTAGCCGGGTGCCGTATGCTTCAAGTTGTTGAGCT CACAATGTTTGGTTGTGATTATGCTTATCCAGAAATAGGCTTCACCCAAGAGGGCCTTAT GATGTTTTTTCAGTCTTGCCCAATCCGTGATCTTGTGCTATGTGGCGCCAATATCTTTGA TGATGAGGGGATGAAGGCCCTCTCATCTGCACAATTCCTGCAGACGCTCTAGCTTATGGA TTGCGTATATATAACTGATGCTGGGATGTGCTTGCTTGCAGATAGCCCATCTTTGGTTAA CCTTACACTGCGGCAATCTGACGGTTTTTCTGATGTTGGAGTTGGTGAGGTTGTACGTGC ACGGAAATTGGATTCTCTGATTGTTGAAGGTTGTAGCAGGGTATCTCAGAAAGCTGTTCT GGGGACTGCCAAATCTATTCGCTATGAACGATATTATCCTGGTTATGGGAAGCTAAGAAG ATCAAGCTTGAGCTTCGGGCAGGATTGAGTCCCCTCAAGATCTTCAGTTGTTTTTTGGAC CCCCTGTTGAAGTGCACAGCATTGACGGCTGCTGTTTTCATTTTTCATATTTCTGGACCT GCTTTTGGTGATTGTCTGTCAGTCGGTTATATTAGCTTGTAATAGTGATTTTTATAAGGC ATCTGATGTGTGAAAACCATGGTAATGGTCAACACAATGGTACCCTGCAACCAGTGATTT ACTTATTTCC