Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0515400-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:20005405:20008855:1 gene:Os12g0515400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plastidic 2-oxoglutarate/malate transporter. (Os12t0515400-01);Similar to plastidic 2-oxoglutarate/malate transporter. (Os12t0515400-02)
Sequence

ATGGCCACCTCCACCTCCGCCGCCACCGCCCCCCTCACCTGCCACCACCTCGGCCTCCGC
CTCCGCCCTCGCCTCCCCTCCCTCCCCCTCCGCCCCCTCTCCCCCTCCCCCTCCCTCTCC
CTCTCCCGCCCCACCCCACTCACCCCTTCTCCTCCTCCTCGCCACCGCGCCCTTCATGCC
TCCGCCTCCGCTGCTCCAGCGGCGCCGCCGTCGCAGCCGCCGAAGCCGGTGCTTCAGGGG
GCGGCAATCAAGCCGCTGGTGGCAACCATCGGGACCGGGGTGCTGATATGGCTGGTCCCG
CCGCCCGCGGGCGTGGCGCGCAACGCGTGGCAGCTGCTGTCCATCTTCCTCGCCACCATC
GTCGGGATCATCACCCAGCCTCTCCCGCTCGGCGCCGTCGCGCTGCTCGGCCTCGGCGCC
GCCGTGCTCACGCGGACGCTCACGTTCGCCGCCGCGTTCTCCGCGTTCGGCGACCCGATC
CCGTGGCTCATCGCGCTCGCCTTCTTCTTCGCCCGCGGCTTCATCAAGACCGGCCTCGGA
AGCCGCGTCGCCTACGCCTTCGTCTCCGCCTTCGGCGGCTCGTCGCTCGGGCTCGGCTAC
GCGCTCGTGTTCGCCGAGGCGCTGCTGGCGCCGGCCATCCCGTCGGTGTCGGCGCGCGCG
GGGGGCATCTTCCTGCCGCTCGTCAAGTCGCTGTGCGAGGCGTGCGGCTCGCGCGCCGGC
GACGGCACGGAGAGGAGGCTCGGGTCGTGGCTGATGCTCACGTGCTTCCAGACGTCGGTG
ATCTCGTCGGCGATGTTCCTCACCGCCATGGCAGCGAACCCGCTGGCGGCGAACCTGACG
GCGGGGACGATCGGGCAGGGGATCGGGTGGACGCTGTGGGCGAAGGCCGCCATTGTGCCG
GGCTTGCTGTCGCTGGTGTTTGTGCCGTTGATTCTGTACCTGATCTACCCGCCGGAGGTG
AAGACCAGCCCCGACGCGCCGCGGCTGGCGAAGGAGCGGTTGGAGAAGATGGGGCCTATG
AGCAAGGAGGAGAAGATCATGGCTGGAACGCTGTTCCTCACGGTAGGTCTTTGGATCTTT
GGTGGAATGCTGAATGTGGATGCAGTGTCTGCTGCAATTCTTGGCCTATCCGTCCTCCTG
ATTTCTGGAGTTGTTACATGGAAAGAGTGTTTGGGGGAGGCTGTAGCGTGGGATACCCTT
ACATGGTTTGCTGCTCTTATTGCAATGGCTGGATACCTCAACAAATACGGGTTGATCTCT
TGGTTCAGTGAGACTGTTGTGAAGTTTGTTGGTGGCCTTGGTCTCTCATGGCAACTATCG
TTTGGTGTCTTGGTGCTGCTGTACTTCTACTCCCACTATTTCTTTGCCAGTGGCGCAGCG
CACATTGGAGCAATGTTCACTGCATTTTTGTCAGTGTCCAGCGCCTTGGGCACTCCTCCT
CTAATTGCTGCCATGGTTCTTTCATTCCTCTCAAACATCATGGGTGGACTCACGCACTAT
GGAATTGGGTCTGCTCCTGTCTTCTACGGTGCTGGCTATGTTCCACTGGCTCAGTGGTGG
GGGTATGGATTTGTCATTTCCATCGTTAACATCATCATCTGGCTTGGTGCTGGAGGCTTC
TGGTGGAAGATGCTCGGCTTGTGGTGA

Peptide Sequence

PEP ID

Os12t0515400-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:20005405:20008855:1 gene:Os12g0515400 transcript:Os12t0515400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plastidic 2-oxoglutarate/malate transporter. (Os12t0515400-01);Similar to plastidic 2-oxoglutarate/malate transporter. (Os12t0515400-02)
Sequence

MATSTSAATAPLTCHHLGLRLRPRLPSLPLRPLSPSPSLSLSRPTPLTPSPPPRHRALHA
SASAAPAAPPSQPPKPVLQGAAIKPLVATIGTGVLIWLVPPPAGVARNAWQLLSIFLATI
VGIITQPLPLGAVALLGLGAAVLTRTLTFAAAFSAFGDPIPWLIALAFFFARGFIKTGLG
SRVAYAFVSAFGGSSLGLGYALVFAEALLAPAIPSVSARAGGIFLPLVKSLCEACGSRAG
DGTERRLGSWLMLTCFQTSVISSAMFLTAMAANPLAANLTAGTIGQGIGWTLWAKAAIVP
GLLSLVFVPLILYLIYPPEVKTSPDAPRLAKERLEKMGPMSKEEKIMAGTLFLTVGLWIF
GGMLNVDAVSAAILGLSVLLISGVVTWKECLGEAVAWDTLTWFAALIAMAGYLNKYGLIS
WFSETVVKFVGGLGLSWQLSFGVLVLLYFYSHYFFASGAAHIGAMFTAFLSVSSALGTPP
LIAAMVLSFLSNIMGGLTHYGIGSAPVFYGAGYVPLAQWWGYGFVISIVNIIIWLGAGGF
WWKMLGLW

Transcript Sequence

Transcript ID

Os12t0515400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:20005405:20008855:1 gene:Os12g0515400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plastidic 2-oxoglutarate/malate transporter. (Os12t0515400-01);Similar to plastidic 2-oxoglutarate/malate transporter. (Os12t0515400-02)
Sequence

TTTCCGCCCCCCCTCTCGCCGCCGCCGCCGCCGCCATGGCCACCTCCACCTCCGCCGCCA
CCGCCCCCCTCACCTGCCACCACCTCGGCCTCCGCCTCCGCCCTCGCCTCCCCTCCCTCC
CCCTCCGCCCCCTCTCCCCCTCCCCCTCCCTCTCCCTCTCCCGCCCCACCCCACTCACCC
CTTCTCCTCCTCCTCGCCACCGCGCCCTTCATGCCTCCGCCTCCGCTGCTCCAGCGGCGC
CGCCGTCGCAGCCGCCGAAGCCGGTGCTTCAGGGGGCGGCAATCAAGCCGCTGGTGGCAA
CCATCGGGACCGGGGTGCTGATATGGCTGGTCCCGCCGCCCGCGGGCGTGGCGCGCAACG
CGTGGCAGCTGCTGTCCATCTTCCTCGCCACCATCGTCGGGATCATCACCCAGCCTCTCC
CGCTCGGCGCCGTCGCGCTGCTCGGCCTCGGCGCCGCCGTGCTCACGCGGACGCTCACGT
TCGCCGCCGCGTTCTCCGCGTTCGGCGACCCGATCCCGTGGCTCATCGCGCTCGCCTTCT
TCTTCGCCCGCGGCTTCATCAAGACCGGCCTCGGAAGCCGCGTCGCCTACGCCTTCGTCT
CCGCCTTCGGCGGCTCGTCGCTCGGGCTCGGCTACGCGCTCGTGTTCGCCGAGGCGCTGC
TGGCGCCGGCCATCCCGTCGGTGTCGGCGCGCGCGGGGGGCATCTTCCTGCCGCTCGTCA
AGTCGCTGTGCGAGGCGTGCGGCTCGCGCGCCGGCGACGGCACGGAGAGGAGGCTCGGGT
CGTGGCTGATGCTCACGTGCTTCCAGACGTCGGTGATCTCGTCGGCGATGTTCCTCACCG
CCATGGCAGCGAACCCGCTGGCGGCGAACCTGACGGCGGGGACGATCGGGCAGGGGATCG
GGTGGACGCTGTGGGCGAAGGCCGCCATTGTGCCGGGCTTGCTGTCGCTGGTGTTTGTGC
CGTTGATTCTGTACCTGATCTACCCGCCGGAGGTGAAGACCAGCCCCGACGCGCCGCGGC
TGGCGAAGGAGCGGTTGGAGAAGATGGGGCCTATGAGCAAGGAGGAGAAGATCATGGCTG
GAACGCTGTTCCTCACGGTAGGTCTTTGGATCTTTGGTGGAATGCTGAATGTGGATGCAG
TGTCTGCTGCAATTCTTGGCCTATCCGTCCTCCTGATTTCTGGAGTTGTTACATGGAAAG
AGTGTTTGGGGGAGGCTGTAGCGTGGGATACCCTTACATGGTTTGCTGCTCTTATTGCAA
TGGCTGGATACCTCAACAAATACGGGTTGATCTCTTGGTTCAGTGAGACTGTTGTGAAGT
TTGTTGGTGGCCTTGGTCTCTCATGGCAACTATCGTTTGGTGTCTTGGTGCTGCTGTACT
TCTACTCCCACTATTTCTTTGCCAGTGGCGCAGCGCACATTGGAGCAATGTTCACTGCAT
TTTTGTCAGTGTCCAGCGCCTTGGGCACTCCTCCTCTAATTGCTGCCATGGTTCTTTCAT
TCCTCTCAAACATCATGGGTGGACTCACGCACTATGGAATTGGGTCTGCTCCTGTCTTCT
ACGGTGCTGGCTATGTTCCACTGGCTCAGTGGTGGGGGTATGGATTTGTCATTTCCATCG
TTAACATCATCATCTGGCTTGGTGCTGGAGGCTTCTGGTGGAAGATGCTCGGCTTGTGGT
GAGGAGCAAAGTAAATGCGGGTTTTTCCGTTTCTGTTTCGGTAGAAGACTGAAAGAAACC
TAGCTGAAATTGCGGTAGCACAGGTACAGCCATCCGCAAATTTTGTCGACATGATTTTGC
AACCAGCAACCCATTCTTTTAGTTTGTACCAATACATTTGTTTCATCCTTGGGTTCTAAC
TGTTAATTGCAAAGCCTGGGCACAGTTTTACTGGCAACAATTGGTATGTTGAATGGATCT
TGGTGATCTTAACCTGCAGATTGTGACCCTTGTGCCTCT