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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0508266-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:19531967:19534815:-1 gene:Os12g0508266 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histone deacetylase superfamily protein. (Os12t0508266-01)
Sequence

ATGTCGTCATCCTCCTCCGCCGCCGCAGGTGCTGGCTCCGGCGAGCCCTCGTCGACGTCC
CGGCCGGGGAAGGAGAGGGAGGACGGCGGCGATGGCGGCGGCCGTAAGGAGGGGGAGGGA
GGCGCGGATTTTGATCTGGCCGGAGCCGCGGCTGGGTGGGTGGAGGCGCGGACCAGCTGC
CCTCACCTCCCCGCCATGCCCGCGGCCAGCGCCGACGACCTCGCGCGCGTGCCGCCGCCC
GACTCGCCGTGCTCTAGATGTCATCACCCTGCTGAAAACTGGTTGTGCTTGATCTGTAAA
GATGTCCTGTGCAGCCGTTTTATCAACAAACATATGTTGTACCATTATCAAGATACAGGA
CATTGTCTTGCCCTGAGCTTCAGTGATCTGTCAATCTGGTGTTTTGCCTGCGACTCCTAC
CTAGACGTTCAATCCATCTTAGAACTGCGTCCAGTTTATGAAGTTGCACATCTGATGAAA
TTTGGACAGCGGCCTCCATTTCGATCACTTGATGTACTGGATTTGAGCAGTGGACAGAAC
GGAGGTTCACCATCACAGTCCTAA

Peptide Sequence

PEP ID

Os12t0508266-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:19531967:19534815:-1 gene:Os12g0508266 transcript:Os12t0508266-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histone deacetylase superfamily protein. (Os12t0508266-01)
Sequence

MSSSSSAAAGAGSGEPSSTSRPGKEREDGGDGGGRKEGEGGADFDLAGAAAGWVEARTSC
PHLPAMPAASADDLARVPPPDSPCSRCHHPAENWLCLICKDVLCSRFINKHMLYHYQDTG
HCLALSFSDLSIWCFACDSYLDVQSILELRPVYEVAHLMKFGQRPPFRSLDVLDLSSGQN
GGSPSQS

Transcript Sequence

Transcript ID

Os12t0508266-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:19531967:19534815:-1 gene:Os12g0508266 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histone deacetylase superfamily protein. (Os12t0508266-01)
Sequence

CTTCAGATCGTATCTCCTGCACCGCCAACCACCGCCTCCGACGATGTCGTCATCCTCCTC
CGCCGCCGCAGGTGCTGGCTCCGGCGAGCCCTCGTCGACGTCCCGGCCGGGGAAGGAGAG
GGAGGACGGCGGCGATGGCGGCGGCCGTAAGGAGGGGGAGGGAGGCGCGGATTTTGATCT
GGCCGGAGCCGCGGCTGGGTGGGTGGAGGCGCGGACCAGCTGCCCTCACCTCCCCGCCAT
GCCCGCGGCCAGCGCCGACGACCTCGCGCGCGTGCCGCCGCCCGACTCGCCGTGCTCTAG
ATGTCATCACCCTGCTGAAAACTGGTTGTGCTTGATCTGTAAAGATGTCCTGTGCAGCCG
TTTTATCAACAAACATATGTTGTACCATTATCAAGATACAGGACATTGTCTTGCCCTGAG
CTTCAGTGATCTGTCAATCTGGTGTTTTGCCTGCGACTCCTACCTAGACGTTCAATCCAT
CTTAGAACTGCGTCCAGTTTATGAAGTTGCACATCTGATGAAATTTGGACAGCGGCCTCC
ATTTCGATCACTTGATGTACTGGATTTGAGCAGTGGACAGAACGGAGGTTCACCATCACA
GTCCTAATGCTCCATATTCTGTTAGATTTCTTTTCATTATGGAAGACTAGTTAAACAATA
TGAACAAACAGTAGTCTACTATGTAAGGTGTCACTTGTTAAACTTCAGTACGATATGCCA
GATGAATGATCCTGCTTCTCCT