Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0507200-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:19462695:19465623:1 gene:Os12g0507200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC INITIATION FACTOR 4D description:Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (eIF-4D). (Os12t0507200-01)
Sequence

ATGTCGGACTCCGAGGAGCACCACTTCGAGTCGAAGGCCGACGCCGGCGCCTCCAAGACC
TACCCGCAGCAGGCTGGGACCATCCGCAAAAATGGCTACATAGTCATCAAGAACCGCCCC
TGCAAGGTTGTTGAGGTTTCAACCTCTAAAACTGGGAAGCACGGTCACGCCAAGTGCCAC
TTTGTTGCAATTGACATCTTTACTGCCAAGAAGCTCGAAGATATTGTGCCATCTTCTCAC
AACTGTGATGTCCCGCATGTGAACCGTACGGAGTACCAGCTCATTGATATATCTGAGGAT
GGATTTGTGAGTCTGTTAACTGAAAATGGCAACACCAAGGATGACCTCAGGCTCCCTACT
GATGATAACCTGCTTAGTCAGATCAAGGATGGATTTGGAGAAGGGAAGGACCTGGTGGTG
ACTGTTATGTCTGCCATGGGAGAGGAGCAGATCTGCGCGCTGAAGGACATCGGCCCGAAG
TAA

Peptide Sequence

PEP ID

Os12t0507200-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:19462695:19465623:1 gene:Os12g0507200 transcript:Os12t0507200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC INITIATION FACTOR 4D description:Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (eIF-4D). (Os12t0507200-01)
Sequence

MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPT
DDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPK

Transcript Sequence

Transcript ID

Os12t0507200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:19462695:19465623:1 gene:Os12g0507200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC INITIATION FACTOR 4D description:Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (eIF-4D). (Os12t0507200-01)
Sequence

TCCTCCCCCCTCGCCGTCGCCGCCGCCGCCGCCGCCGACGCCGCCGCGACCACCTCTCGC
AAGGGGATTTTGTAGGGGTTTCTGATCCGAGGAGCGGGCGATGTCGGACTCCGAGGAGCA
CCACTTCGAGTCGAAGGCCGACGCCGGCGCCTCCAAGACCTACCCGCAGCAGGCTGGGAC
CATCCGCAAAAATGGCTACATAGTCATCAAGAACCGCCCCTGCAAGGTTGTTGAGGTTTC
AACCTCTAAAACTGGGAAGCACGGTCACGCCAAGTGCCACTTTGTTGCAATTGACATCTT
TACTGCCAAGAAGCTCGAAGATATTGTGCCATCTTCTCACAACTGTGATGTCCCGCATGT
GAACCGTACGGAGTACCAGCTCATTGATATATCTGAGGATGGATTTGTGAGTCTGTTAAC
TGAAAATGGCAACACCAAGGATGACCTCAGGCTCCCTACTGATGATAACCTGCTTAGTCA
GATCAAGGATGGATTTGGAGAAGGGAAGGACCTGGTGGTGACTGTTATGTCTGCCATGGG
AGAGGAGCAGATCTGCGCGCTGAAGGACATCGGCCCGAAGTAAACCTCACCTGTTCCATG
TGATTACTACTGAACTTTCAGTTATGATCGGTTTGGGTATGTAGGAACAAGGATTCTCTT
AAAACATACAGAGTCACAACCATTAAGGAATTGTATCACAAAACTCGTCCCCGCCAGTCA
GGCTCTTATTTATCTGGGTCTCGTCGTCGATTCACTGTCCTAAATTTCCTGAGTTCCTGT
ACCCCTAAACCACCATCCCTAGACGTTTTGTTAACCCTTTGGGTATTTGGTAGCAACTTT
CATTGTGGAGTTGGATTGTGTGCTTAAGGTGAAAATATCATTTGTGATAAACCATGAGAC
TTTGTTGTGCTGTCACCATGACCACTGCTATTAGCATCTGCAGATGCAACTTTTGACAGT
T