Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0498800-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:18938900:18943800:-1 gene:Os12g0498800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0498800-01)
Sequence

ATGGCGGTCGGCATCGCGCTGCTGCTCGACCTCGCCTCCCGCGGCCCCCGCTACGCCTCC
GGGGTCCACGCCCACTCCGCGATCTCCGCCTCCGCCGCCGCCGCCGCGGCCGCAGCCGCC
GCGCTCTCCGCCACCGGCATCCCCCTCTCCGCGCGCCACCTCTTCGGTTTCCCTGGGTTT
ACTATAGCCCATTGTGATGCTGGTGCACCAACTGGATTGAATGATGCTCCTGATCTTATT
AATGGTCTTAATGACAAAATACAAGACTCCCTCCAGTACCCAATAAAGGAATACCCCTTG
GAGTTGAAGCCACTCTTTTCGGCCTTTGCTTTAAAGAATTTTAGCTTGACAACCCTGAGG
TCCTTCTTATTGTACTATTTGCCACTTTTGGAACCTCATCCGCACACTGATGGTGATGAT
GAGGATGACCTGCTTCAAGATGAGTCTGAAAATAGGCCACCTGTTGATTTGGTTACTCCC
TTCTACAATTCAGTGAAGCAAATCATCCGTGAGACTTCTGTTGTAACAACCAGAAGAATA
TTGGAAAGGATTGCAGTTTGTCATGTTTCACAAAGAACAGCATGGAAGCTTCTCAAGGAT
GCCTCAAAATCATCAAAGAGGAAATCTGTAAGGGGGATGCCCTTCCAAGAGTACTCATAT
TGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTG
CAATCCATAGTTGAGGTTTACAGATGTTTTTTCGGTAAGCCTTCCAATGATCAGGCAATG
TTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAA
TGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCA
GTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATA
CTTGTTTTCGAGAAGTTCCAGTTGCCGCTCTAA

Peptide Sequence

PEP ID

Os12t0498800-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:18938900:18943800:-1 gene:Os12g0498800 transcript:Os12t0498800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0498800-01)
Sequence

MAVGIALLLDLASRGPRYASGVHAHSAISASAAAAAAAAAALSATGIPLSARHLFGFPGF
TIAHCDAGAPTGLNDAPDLINGLNDKIQDSLQYPIKEYPLELKPLFSAFALKNFSLTTLR
SFLLYYLPLLEPHPHTDGDDEDDLLQDESENRPPVDLVTPFYNSVKQIIRETSVVTTRRI
LERIAVCHVSQRTAWKLLKDASKSSKRKSVRGMPFQEYSYCVARTTFRAHALGVAAAWVV
QSIVEVYRCFFGKPSNDQAMFDEMDKVKLFGKKIYGITVKCGFSLVFASIGAGIGVLVHP
VHGQWLGCTLGDFAGPIVAILVFEKFQLPL

Transcript Sequence

Transcript ID

Os12t0498800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:18938900:18943800:-1 gene:Os12g0498800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0498800-01)
Sequence

ACCTTCCGCCTCGCCTTCCGGGCTTCCTCCGCTCCACGCCGGCGAGTCCACACTCCTCCG
ACCAGCCGCCGCCGCCGCCCCGCGTCGTCACGCGCGCGCGCGCGCGAGAGAGAGAGATCC
CCCTGCCCCAGCCACGATGGCGGTCGGCATCGCGCTGCTGCTCGACCTCGCCTCCCGCGG
CCCCCGCTACGCCTCCGGGGTCCACGCCCACTCCGCGATCTCCGCCTCCGCCGCCGCCGC
CGCGGCCGCAGCCGCCGCGCTCTCCGCCACCGGCATCCCCCTCTCCGCGCGCCACCTCTT
CGGTTTCCCTGGGTTTACTATAGCCCATTGTGATGCTGGTGCACCAACTGGATTGAATGA
TGCTCCTGATCTTATTAATGGTCTTAATGACAAAATACAAGACTCCCTCCAGTACCCAAT
AAAGGAATACCCCTTGGAGTTGAAGCCACTCTTTTCGGCCTTTGCTTTAAAGAATTTTAG
CTTGACAACCCTGAGGTCCTTCTTATTGTACTATTTGCCACTTTTGGAACCTCATCCGCA
CACTGATGGTGATGATGAGGATGACCTGCTTCAAGATGAGTCTGAAAATAGGCCACCTGT
TGATTTGGTTACTCCCTTCTACAATTCAGTGAAGCAAATCATCCGTGAGACTTCTGTTGT
AACAACCAGAAGAATATTGGAAAGGATTGCAGTTTGTCATGTTTCACAAAGAACAGCATG
GAAGCTTCTCAAGGATGCCTCAAAATCATCAAAGAGGAAATCTGTAAGGGGGATGCCCTT
CCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGC
TGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTTCGGTAAGCCTTC
CAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATA
CGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGG
GGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGG
ACCAATTGTCGCCATACTTGTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATG
AAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCT
GACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTG
TTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTA
GATTTTGAAACTCAGGCTAACAGTTTTGACT