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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0496900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:18855877:18860581:-1 gene:Os12g0496900 gene_biotype:protein_coding transcript_biotype:protein_coding description:SSXT family protein. (Os12t0496900-01)
Sequence

ATGCAGCAGCAGCCGATGCCGATGCCCGCGCAGGCGCCGCCGACGGCCGGAATCACCACC
GAGCAGATCCAAAAGTATCTGGATGAAAACAAGCAGCTTATTTTGGCTATTTTGGAAAAT
CAGAATCTGGGAAAGTTGGCAGAATGTGCTCAGTATCAAGCGCAGCTTCAGAAGAATCTC
TTGTACTTGGCTGCAATTGCTGATACTCAACCGCAGACCACTATAAGCCGTCCCCAGATG
GTGCCGCATGGTGCATCGCCGGGGTTAGGGGGGCAATACATGTCGCAGGTGCCAATGTTC
CCCCCCAGGACCCCTCTAACGCCCCAGCAGATGCAGGAGCAGCAGCTGCAGCAACAGCAA
GCCCAGCTGCTCTCGTTCGGCGGTCAGATGGTTATGAGGCCTGGCGTTGTGAATGGCATT
CCTCAGCTTCTGCAAGGCGAAATGCACCGCGGAGCAGATCACCAGAACGCTGGCGGGGCC
ACCTCGGAGCCTTCCGAGAGCCACAGGAGCACCGGCACCGAAAATGACGGTGGAAGCGAC
TTCGGCGATCAATCCTAA

Peptide Sequence

PEP ID

Os12t0496900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:18855877:18860581:-1 gene:Os12g0496900 transcript:Os12t0496900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:SSXT family protein. (Os12t0496900-01)
Sequence

MQQQPMPMPAQAPPTAGITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNL
LYLAAIADTQPQTTISRPQMVPHGASPGLGGQYMSQVPMFPPRTPLTPQQMQEQQLQQQQ
AQLLSFGGQMVMRPGVVNGIPQLLQGEMHRGADHQNAGGATSEPSESHRSTGTENDGGSD
FGDQS

Transcript Sequence

Transcript ID

Os12t0496900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:18855877:18860581:-1 gene:Os12g0496900 gene_biotype:protein_coding transcript_biotype:protein_coding description:SSXT family protein. (Os12t0496900-01)
Sequence

AAACCCTCCAAAGTCCAAACCCCTCTCCTCCTCCTCTCCAACGCCATAAACCACAGAGAG
GGGGAGAAGAAGTGGAAGCGTGAGCCGCCGCAGCCGCACGCGATGCAGCAGCAGCCGATG
CCGATGCCCGCGCAGGCGCCGCCGACGGCCGGAATCACCACCGAGCAGATCCAAAAGTAT
CTGGATGAAAACAAGCAGCTTATTTTGGCTATTTTGGAAAATCAGAATCTGGGAAAGTTG
GCAGAATGTGCTCAGTATCAAGCGCAGCTTCAGAAGAATCTCTTGTACTTGGCTGCAATT
GCTGATACTCAACCGCAGACCACTATAAGCCGTCCCCAGATGGTGCCGCATGGTGCATCG
CCGGGGTTAGGGGGGCAATACATGTCGCAGGTGCCAATGTTCCCCCCCAGGACCCCTCTA
ACGCCCCAGCAGATGCAGGAGCAGCAGCTGCAGCAACAGCAAGCCCAGCTGCTCTCGTTC
GGCGGTCAGATGGTTATGAGGCCTGGCGTTGTGAATGGCATTCCTCAGCTTCTGCAAGGC
GAAATGCACCGCGGAGCAGATCACCAGAACGCTGGCGGGGCCACCTCGGAGCCTTCCGAG
AGCCACAGGAGCACCGGCACCGAAAATGACGGTGGAAGCGACTTCGGCGATCAATCCTAA
GGGCTAAGTTGGCCTTTCAGGTCGCGACGAAAAACAAAAAAAAAACATGTAGGCAACGAC
TGAGTGGAGAGGGGATCATTCCTGTGCCCTTGAACGGTGAGTGGCCGTGATCTTCGCCTG
ATGATGGTCAGTGGTTGTTACATTTACCTGTGTTTTTGAGACTTTCAGTCTGGTACAAAC
GTAGATTGCTGC