Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0496700-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:18851047:18852758:-1 gene:Os12g0496700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 655 description:Similar to F-box domain containing protein, expressed. (Os12t0496700-00)
Sequence

ATGGGCCATGTCAAGAAATCCGTATTGGTCGCGCACGAGAGCCATGGAGAAGTTAACCCG
CCAGAAAAGGAAGGAGGAGGCAGCCCGAAGAGGAGGAGGACGGAGGCGGAGGAGGAAGAA
GATGATGGTGATGAGGAGGCCGCCGCCGGCGACCTCATCGGGGACCTCCCGGACGACATC
CTCCGCGACATCATCGCCCGCCTCCCCACCAGGGAAGCCTGCACCACGCAGGTCCTCGCC
AAGCGGTGGCGCCATCTCTGGCGCTCCACGCCGCTCCGCCTCGACTACCGTAGCCTCCCC
CTCCGCCGCCACAACAAGGGGAACGCCCTCGCCGTCGCCGTCGCCGGCGTCATCTCCGCC
GTCCTCTCCGCCCACCCGGGCCCATGCCGCTGCCTCTGCGTCCCCGCCGACAGCAGCCGC
GACACCGTGGATACCTGGCTCCGATCCGCCGCCGTCGACAACCTTCAGGAGCTCGAGTTC
CTCAGCAACCGCGGCGGTGCGCCGCCGCCACCATCGCCGCCTCCTCCTCCACCGGTATCC
CTCTTCCGATTCTCTTATACCCTCCACATCGCCACCATCAGCAGGTGCGAGCTCCAGCAC
ACCACCGTCCATGAGCTTCGCTTCCTGCGGCTCAAGCATCTCGGGCTCGAGGACGTCACA
ATCACGGAGGCCTCGCTGCACGCCATGATCGCCCGCTGCCCGCTGCTGGAGTGCTTGCTG
CTGGCTCGCAGCGTCGGCTTCCGTCGCGTTCGGATCAACTCGCCTAGCCTTAGAAGCTTG
GGTGTGTTGGTTGCGCGTCGTCGGATAGCAGCGCTGCCGCGGCAGACGCAGCTGGAGGAA
ATCATCGTCGAGGATGCCCCTCTTCTCGAGAAGTTGCTCGATCTTGCAGTGCACAATAAC
CTGCGATTATCGGTAATTTCCGCGCCGAAGCTGGAGACTATTGGTTGCCTTACAGATCGA
TGGTTTGGCCCAAGGATCATGTTTGGCACTACAACTGTTGTCAAGGGAGTGAGTGTTGTT
AGGTTGACAGAGGCCGTGCGCACTATGAGGATTTTAGCAATCAATATGTTTGTTCTTAAT
CTGGCTAAGGTGATTGACTTGATGAGATGCTTTCCATGCTTGGAGAAATTGTACTTGAAG
TGTTGTCTATCTGCTGGAAATAATTATTGGCGTTGTGAATACCAGACTCTTATCAAAATC
CTTGATATCCGTCTGAAGACAGTGGAGTTGGAAAATTACCGGGGAACCAAGCCACAAATC
GACTTTGCCCAGTTCTTTGTACTTAATGGTAAAGTGCTAGAGTCTATGAAATTTGTGGTA
AAGTCTGAAGATTACTATGATGGGTTTGTTGCAAAACAACATAAGATGCTTCAGCTCGAC
AAAAGGGCTTCGAGATGTGCGCGTTTCAAGTTTACCACTGATAGATGCCACCATCATGCA
GATCCTGAATGTCCTATAGATATTGAGCATGTCCAAGATTTGTCTTTTACTGATCCCTTT
GAATGCAGATGTTGA

Peptide Sequence

PEP ID

Os12t0496700-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:18851047:18852758:-1 gene:Os12g0496700 transcript:Os12t0496700-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 655 description:Similar to F-box domain containing protein, expressed. (Os12t0496700-00)
Sequence

MGHVKKSVLVAHESHGEVNPPEKEGGGSPKRRRTEAEEEEDDGDEEAAAGDLIGDLPDDI
LRDIIARLPTREACTTQVLAKRWRHLWRSTPLRLDYRSLPLRRHNKGNALAVAVAGVISA
VLSAHPGPCRCLCVPADSSRDTVDTWLRSAAVDNLQELEFLSNRGGAPPPPSPPPPPPVS
LFRFSYTLHIATISRCELQHTTVHELRFLRLKHLGLEDVTITEASLHAMIARCPLLECLL
LARSVGFRRVRINSPSLRSLGVLVARRRIAALPRQTQLEEIIVEDAPLLEKLLDLAVHNN
LRLSVISAPKLETIGCLTDRWFGPRIMFGTTTVVKGVSVVRLTEAVRTMRILAINMFVLN
LAKVIDLMRCFPCLEKLYLKCCLSAGNNYWRCEYQTLIKILDIRLKTVELENYRGTKPQI
DFAQFFVLNGKVLESMKFVVKSEDYYDGFVAKQHKMLQLDKRASRCARFKFTTDRCHHHA
DPECPIDIEHVQDLSFTDPFECRC

Transcript Sequence

Transcript ID

Os12t0496700-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:18851047:18852758:-1 gene:Os12g0496700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 655 description:Similar to F-box domain containing protein, expressed. (Os12t0496700-00)
Sequence

ATGGGCCATGTCAAGAAATCCGTATTGGTCGCGCACGAGAGCCATGGAGAAGTTAACCCG
CCAGAAAAGGAAGGAGGAGGCAGCCCGAAGAGGAGGAGGACGGAGGCGGAGGAGGAAGAA
GATGATGGTGATGAGGAGGCCGCCGCCGGCGACCTCATCGGGGACCTCCCGGACGACATC
CTCCGCGACATCATCGCCCGCCTCCCCACCAGGGAAGCCTGCACCACGCAGGTCCTCGCC
AAGCGGTGGCGCCATCTCTGGCGCTCCACGCCGCTCCGCCTCGACTACCGTAGCCTCCCC
CTCCGCCGCCACAACAAGGGGAACGCCCTCGCCGTCGCCGTCGCCGGCGTCATCTCCGCC
GTCCTCTCCGCCCACCCGGGCCCATGCCGCTGCCTCTGCGTCCCCGCCGACAGCAGCCGC
GACACCGTGGATACCTGGCTCCGATCCGCCGCCGTCGACAACCTTCAGGAGCTCGAGTTC
CTCAGCAACCGCGGCGGTGCGCCGCCGCCACCATCGCCGCCTCCTCCTCCACCGGTATCC
CTCTTCCGATTCTCTTATACCCTCCACATCGCCACCATCAGCAGGTGCGAGCTCCAGCAC
ACCACCGTCCATGAGCTTCGCTTCCTGCGGCTCAAGCATCTCGGGCTCGAGGACGTCACA
ATCACGGAGGCCTCGCTGCACGCCATGATCGCCCGCTGCCCGCTGCTGGAGTGCTTGCTG
CTGGCTCGCAGCGTCGGCTTCCGTCGCGTTCGGATCAACTCGCCTAGCCTTAGAAGCTTG
GGTGTGTTGGTTGCGCGTCGTCGGATAGCAGCGCTGCCGCGGCAGACGCAGCTGGAGGAA
ATCATCGTCGAGGATGCCCCTCTTCTCGAGAAGTTGCTCGATCTTGCAGTGCACAATAAC
CTGCGATTATCGGTAATTTCCGCGCCGAAGCTGGAGACTATTGGTTGCCTTACAGATCGA
TGGTTTGGCCCAAGGATCATGTTTGGCACTACAACTGTTGTCAAGGGAGTGAGTGTTGTT
AGGTTGACAGAGGCCGTGCGCACTATGAGGATTTTAGCAATCAATATGTTTGTTCTTAAT
CTGGCTAAGGTGATTGACTTGATGAGATGCTTTCCATGCTTGGAGAAATTGTACTTGAAG
TGTTGTCTATCTGCTGGAAATAATTATTGGCGTTGTGAATACCAGACTCTTATCAAAATC
CTTGATATCCGTCTGAAGACAGTGGAGTTGGAAAATTACCGGGGAACCAAGCCACAAATC
GACTTTGCCCAGTTCTTTGTACTTAATGGTAAAGTGCTAGAGTCTATGAAATTTGTGGTA
AAGTCTGAAGATTACTATGATGGGTTTGTTGCAAAACAACATAAGATGCTTCAGCTCGAC
AAAAGGGCTTCGAGATGTGCGCGTTTCAAGTTTACCACTGATAGATGCCACCATCATGCA
GATCCTGAATGTCCTATAGATATTGAGCATGTCCAAGATTTGTCTTTTACTGATCCCTTT
GAATGCAGATGTTGAAGCCGGTTTGGTCTATTT