Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0493900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:18618482:18621147:1 gene:Os12g0493900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os12t0493900-01)
Sequence

ATGAAGGTGGATACGGAGATGGAGAGGCTGCTCGACGAGATCCCCATGCTGCACCATGGC
GACCTCCTCGGGCGGCGCGACGCGGCGGGGGATGATGGTGGTGGTGGTGGGTTTGACGTG
TCTTGCCTCATCAGGGAGCTCGCGGAGATGGGGGTGGTGGAGGGGGATGATGATGATGGG
ATGCTGCCGTCGCCGCCGGGGTTCTTTGGCGGCGGCGGTGGTGGTTTGTCGCCGACGTCC
AGCCTCTGTTTTGTGGGTCAGGATGGGGGGTTCACGGCGCCGTCGCGGCCGTTCTCGCTG
GAGAGGCGCCGCGTGGACGCGCCGCCGCCGACGCCGCCGTCGTCGCTGTTCGACCCGTTC
GCTGGGTTCTGCCTGTTCGACGCCACCGCCGCCGCAGGGGCCGACTCCGACGGGTGGGAC
GTCAGGTGCTCGCCGCCCCCGCCCCCGCCCCCGCCGCCGCCGCAGGCGCCGCCGGCGAGG
GGGCGGAGCAAGGCGGCGAGGAGGAAGGGCGGGTGCGCGGCGCCCGCCGCGGCGGCGGCG
GCGAGCCCGACGAAGAAGTCCGCCGCGGCGTCGGCGGCGGCGGCGAGGTACGAGAGCCTC
GCCGGGCTGCGCGGGTTCATGTACCACATCGCCAGGGACCAGCACGGGTGCCGGTTCCTG
CAGCAGCGGCTCGACGACGGCAAGCGCGAGGTCGACTTCATCTTCGCCGGCGTCGCGCGC
CACGCCGTCGAGCTGATGGTGAACCCGTTCGGCAACTACCTCATGCAGAAGCTGCTCGCC
GTCTGCGACGACGAGCAGCGGATGGCCATCGTCCTCACCCTCACCAAGGACCCCTTCGTC
CTCGTCAGGATCTCCCTCAATGTCCACGGGACAAGGGCAGTGCAGAAGCTGATCGAGAGC
CTGAGGACAAGGGAGGAGATCCAGCTCGTCGTCCAGGCGCTGCGCCCCGGGTTCTTGGAG
CTCATCAAGGACCCTAATGGCAATCATGTCGTGCAGAGGTGCTTGCAATCCTTTGATGCC
AATGACAACAAGCCGATCTTTGAGGCCGCTGCCGTTCACTGCCTCGACATTGGGATGCAA
TGCCATGGTTGCTGCGTCCTGCAGCGATGCATTGCTCGTTCAGGGGGTGAGCAGAGGGAG
AAGCTGGTTGCTGCGATCGCTTCGAATGGATTCGAACTTGCACAAGATGCCTACGGGAAC
TATGTTGTTCAGTATGTGATAGACCTGAAGGTACCCACTGCAAATGCAAGCCTGACAAAG
CAGTTTCAGGGCAGGTATATTCACCTCTCCATGCAGAAGTTCAGCAGCAATGTGGTTGAG
AAATGCCTGAAAGTGTTCAAGGAAGCTGACAAGGCTACCATCATTCTGGAGCTCCTTGCT
GTGCCACACTTTGAGCAGCTGCTTCAGCACCCCTTTGCAAACTATGTCATCTACTCAGCT
ATCCAGAACTCCAAGGGTTCACTCCACTCCGCGCTGACGAATGCGATACGGCCTCATGTG
GAACTGCTCAGGACTAGTCCATACTGCAAGAGGATCTACTCTCGAGCTTTGCTGAAGAAG
TGA

Peptide Sequence

PEP ID

Os12t0493900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:18618482:18621147:1 gene:Os12g0493900 transcript:Os12t0493900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os12t0493900-01)
Sequence

MKVDTEMERLLDEIPMLHHGDLLGRRDAAGDDGGGGGFDVSCLIRELAEMGVVEGDDDDG
MLPSPPGFFGGGGGGLSPTSSLCFVGQDGGFTAPSRPFSLERRRVDAPPPTPPSSLFDPF
AGFCLFDATAAAGADSDGWDVRCSPPPPPPPPPPQAPPARGRSKAARRKGGCAAPAAAAA
ASPTKKSAAASAAAARYESLAGLRGFMYHIARDQHGCRFLQQRLDDGKREVDFIFAGVAR
HAVELMVNPFGNYLMQKLLAVCDDEQRMAIVLTLTKDPFVLVRISLNVHGTRAVQKLIES
LRTREEIQLVVQALRPGFLELIKDPNGNHVVQRCLQSFDANDNKPIFEAAAVHCLDIGMQ
CHGCCVLQRCIARSGGEQREKLVAAIASNGFELAQDAYGNYVVQYVIDLKVPTANASLTK
QFQGRYIHLSMQKFSSNVVEKCLKVFKEADKATIILELLAVPHFEQLLQHPFANYVIYSA
IQNSKGSLHSALTNAIRPHVELLRTSPYCKRIYSRALLKK

Transcript Sequence

Transcript ID

Os12t0493900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:18618482:18621147:1 gene:Os12g0493900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os12t0493900-01)
Sequence

AACGCCCCACCTCCAAGAAACCACCTCCCCTCCTCCTCCTCCACCCCAAATCCCTATCCC
TATCTCGATCGGATCTTGGTTATTCCATGGTGCGTTGTTGATTAATTTGTTTGAGGTGAG
ATTTGAGGAGATGAAGGTGGATACGGAGATGGAGAGGCTGCTCGACGAGATCCCCATGCT
GCACCATGGCGACCTCCTCGGGCGGCGCGACGCGGCGGGGGATGATGGTGGTGGTGGTGG
GTTTGACGTGTCTTGCCTCATCAGGGAGCTCGCGGAGATGGGGGTGGTGGAGGGGGATGA
TGATGATGGGATGCTGCCGTCGCCGCCGGGGTTCTTTGGCGGCGGCGGTGGTGGTTTGTC
GCCGACGTCCAGCCTCTGTTTTGTGGGTCAGGATGGGGGGTTCACGGCGCCGTCGCGGCC
GTTCTCGCTGGAGAGGCGCCGCGTGGACGCGCCGCCGCCGACGCCGCCGTCGTCGCTGTT
CGACCCGTTCGCTGGGTTCTGCCTGTTCGACGCCACCGCCGCCGCAGGGGCCGACTCCGA
CGGGTGGGACGTCAGGTGCTCGCCGCCCCCGCCCCCGCCCCCGCCGCCGCCGCAGGCGCC
GCCGGCGAGGGGGCGGAGCAAGGCGGCGAGGAGGAAGGGCGGGTGCGCGGCGCCCGCCGC
GGCGGCGGCGGCGAGCCCGACGAAGAAGTCCGCCGCGGCGTCGGCGGCGGCGGCGAGGTA
CGAGAGCCTCGCCGGGCTGCGCGGGTTCATGTACCACATCGCCAGGGACCAGCACGGGTG
CCGGTTCCTGCAGCAGCGGCTCGACGACGGCAAGCGCGAGGTCGACTTCATCTTCGCCGG
CGTCGCGCGCCACGCCGTCGAGCTGATGGTGAACCCGTTCGGCAACTACCTCATGCAGAA
GCTGCTCGCCGTCTGCGACGACGAGCAGCGGATGGCCATCGTCCTCACCCTCACCAAGGA
CCCCTTCGTCCTCGTCAGGATCTCCCTCAATGTCCACGGGACAAGGGCAGTGCAGAAGCT
GATCGAGAGCCTGAGGACAAGGGAGGAGATCCAGCTCGTCGTCCAGGCGCTGCGCCCCGG
GTTCTTGGAGCTCATCAAGGACCCTAATGGCAATCATGTCGTGCAGAGGTGCTTGCAATC
CTTTGATGCCAATGACAACAAGCCGATCTTTGAGGCCGCTGCCGTTCACTGCCTCGACAT
TGGGATGCAATGCCATGGTTGCTGCGTCCTGCAGCGATGCATTGCTCGTTCAGGGGGTGA
GCAGAGGGAGAAGCTGGTTGCTGCGATCGCTTCGAATGGATTCGAACTTGCACAAGATGC
CTACGGGAACTATGTTGTTCAGTATGTGATAGACCTGAAGGTACCCACTGCAAATGCAAG
CCTGACAAAGCAGTTTCAGGGCAGGTATATTCACCTCTCCATGCAGAAGTTCAGCAGCAA
TGTGGTTGAGAAATGCCTGAAAGTGTTCAAGGAAGCTGACAAGGCTACCATCATTCTGGA
GCTCCTTGCTGTGCCACACTTTGAGCAGCTGCTTCAGCACCCCTTTGCAAACTATGTCAT
CTACTCAGCTATCCAGAACTCCAAGGGTTCACTCCACTCCGCGCTGACGAATGCGATACG
GCCTCATGTGGAACTGCTCAGGACTAGTCCATACTGCAAGAGGATCTACTCTCGAGCTTT
GCTGAAGAAGTGATGAGCTGACGGGCGCTTTTTTCGGCATGTAACAACAAAGCCTGCTGT
CTTGTGCTATTTCTTCAGATTCAAAATGATAAAAAAGGTGGTCGGGAAGACTGTTGTTTT
GTGTTATTATTCAGATTCAAATCGGATAAAGGTGATCGCATCATGTAGATTTGTATAAAT
GAGTGTTCTTTAGTCATGTACTTTTAGCTGTACCTGTACTTGGTGCACTCTTGTGTTGTC
ATAAACCATCTGTGAGATGGAATAAGTTCCAATTGGGCAAATCATCATCACAAAATACCA
ATATCTTTAATGTCATTTGTTCATTATCCG