Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0488900-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:18315197:18319057:-1 gene:Os12g0488900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA-binding protein of the Puf family member 4 description:Armadillo-like helical domain containing protein. (Os12t0488900-01)
Sequence	ATGCGCGCGCCCCCTGCGAGGGTTGGAGATTGTTGTCCTGCTACTGAGATGGATGAAGTG CCGGGTAATCAAGAAGATCCCAGACTTGGGGCCTATGCCGACAAGATCACTGATGCGATG TTTGCGGACCATGTGGAGTTGGGGTCTCATTATGCAGGTGATTCTTCTTCAGAGGCAGGA TGGGCTCCAATGATCGCGAGAATGCAGTCGCAGTCGCAGCTGGGGAGTAACCAGCTTGGT GTCTCCTTTGAGAATGGCAGTTTGCCAGATGACCCGGCGTCGTTGGCATCGGCATTCAAG AACATGAGCTTGGGATTCAGGGATTTTACTGTTGGCACTCCTGCTAATCCTGTCAGTGTT GCACCCCTAGGTGGACATTATCCTGCAAGTCATGTGATTTCATCTGGTGAGACCACAATG AACTCATTTCATCAGCAGGAGTTTGCTCAAGATGGTTTCAGGCCTTCATCTCTGAATCCC AATGTTGCTGAATACATGAAGCCGAAGTACGGTGTACACAATGTTCAGATGTGCACCGGG CTGCATGGCTCGGATTATGTTTCTGGGGACCCGTATAATCTACCATCATCAGCTTCACCT TTACAGAAACAGTATTTTATTGATGGGCAATTCCGGGCTAATGCACCATATCAGCAGACT GGCTCGAATTTCATGAGGCAAGATTTTGATGCTGACAGTCATTATCTTTTGCAATCCCAG TATGCTTATCAGCAAATGCCACAGGTCGCTGGATCTGATGTTCATTGGGTTAGAAGCAAC CAACATGGTGTTCACTCTTCTATCCCTGCAGCTTCACCTTATCTCAGGACACCAATGGTT GGTCAGCAAGCACATAGCAGTGCTGATACTTACTGGAATGGTGCTGCTATTTCACATGGA AACAACCAGCTGAATTCCACATTTGTGAACAATTGCTCATGTATAATTTACCCTGATTGT TCACGCGAAATCTGCGAATATTGCCAGATGAAGCAAGCAGAAAAGTTGAAGCATCGTTAT ATGTTCAGGCGTTCATCCAAAGGTTTCCTGCAGCCTCAGATTTTTGATAAGGTCAACATT AAATGTTTTCCTGGAAAGACGATGGTGAAGTCTGATGATATAAATTCAGCGAGAAATATT CAGTCTGTCTTTGAACCTAATGGCCGCATTGAAATGAATCAGAGAATTAACCAGCATGGA CACAATCAACATCTTAATATTCAGGGCAACGATTTCTTGCTTTTTGACAGGCTAAACTCC CAGGCTCTGTCACCTGTGGAATCTGAATATGGTTTGGCCATGAAAATTCCTCAAATGAGT TATAGTTCAGTAGATGAAGTTGTTGGGAAAATTCATCTCTTGGCAAAGGATCAGAATGGC TGCCGCTTCCTACAGAGGATATTTACAGAAGGTACTTCGGAGAATGTTAAAAAGGTCTTT GATGGAATCATTGAACATATTGGTGAACTTGTGGTCGATCCATTTGGAAACTACTTGGTA CAAAAGCTACTTGAAGAGTGCAACCATGATCAGAAGATGCATATAGTCTATGAAATAACC AAAAGACCAGGGCAGCTTATTAAATTTTCATGCGACATGCATGGGACACGTGTAGTGCAA AAGGTGATAGAAACAATAAACTCGCCAGATGAAGTTTCCATGGTTGTATGTGCCCTGAGC TCTGGTGCCATCACTTTGATGATGGATGCAAATGGCTGTCATGTTGCACTCCGCTGCTTG CAAAAATTCTCACATGAGCACAAAGCATTCCTTCTTAATGTGGCCATGGAATATTACTTT GAGCTAGCCCAGGATCGTCAAGGTTGTTGTATCATTCAAAAATGCATTCTTCATGCAAAT AAGGAACAGAAGAACCAGTTGTTGTACAATATCACTTCCAGGGCTCTTGAGCTGTCAGAG CATCAGTATGGGAACTATGTTGTACAGTATATTCTTGATCTCCACATTTCATGGGCGACA GATGAAATACTGGACAAGCTGGAAGATCATTTCGGATCTCTGTCGATGCAAAAAAGTAGC AGCAATGTGGTAGAGAAATGTTTAAAAGAAGCATCGTGGCCTAAACGTGTTAAAATCATT CACGAGCTTATCAATGACCCTAAGTTACTGCATATCTTGATCGACCCATATGGGAACTAT GTGATCCAAACAGCGCTCAAGGAGTGTGAGGATGCTGCAGTACGCGCTGTGCTGATCGGA GCCATTAGGCCACATGTTGCTGCTCTTCGAAACAACATGTTTGGGAAGAGAATTCTGTCA AAAACTTACCTGAAGAACAGGAAGCACTAA

Peptide Sequence

PEP ID	Os12t0488900-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:18315197:18319057:-1 gene:Os12g0488900 transcript:Os12t0488900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA-binding protein of the Puf family member 4 description:Armadillo-like helical domain containing protein. (Os12t0488900-01)
Sequence	MRAPPARVGDCCPATEMDEVPGNQEDPRLGAYADKITDAMFADHVELGSHYAGDSSSEAG WAPMIARMQSQSQLGSNQLGVSFENGSLPDDPASLASAFKNMSLGFRDFTVGTPANPVSV APLGGHYPASHVISSGETTMNSFHQQEFAQDGFRPSSLNPNVAEYMKPKYGVHNVQMCTG LHGSDYVSGDPYNLPSSASPLQKQYFIDGQFRANAPYQQTGSNFMRQDFDADSHYLLQSQ YAYQQMPQVAGSDVHWVRSNQHGVHSSIPAASPYLRTPMVGQQAHSSADTYWNGAAISHG NNQLNSTFVNNCSCIIYPDCSREICEYCQMKQAEKLKHRYMFRRSSKGFLQPQIFDKVNI KCFPGKTMVKSDDINSARNIQSVFEPNGRIEMNQRINQHGHNQHLNIQGNDFLLFDRLNS QALSPVESEYGLAMKIPQMSYSSVDEVVGKIHLLAKDQNGCRFLQRIFTEGTSENVKKVF DGIIEHIGELVVDPFGNYLVQKLLEECNHDQKMHIVYEITKRPGQLIKFSCDMHGTRVVQ KVIETINSPDEVSMVVCALSSGAITLMMDANGCHVALRCLQKFSHEHKAFLLNVAMEYYF ELAQDRQGCCIIQKCILHANKEQKNQLLYNITSRALELSEHQYGNYVVQYILDLHISWAT DEILDKLEDHFGSLSMQKSSSNVVEKCLKEASWPKRVKIIHELINDPKLLHILIDPYGNY VIQTALKECEDAAVRAVLIGAIRPHVAALRNNMFGKRILSKTYLKNRKH

Transcript Sequence

Transcript ID	Os12t0488900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:18315197:18319057:-1 gene:Os12g0488900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA-binding protein of the Puf family member 4 description:Armadillo-like helical domain containing protein. (Os12t0488900-01)
Sequence	CTCTCCTATTTTCATCAGCTTCCCTTGCAAGCCTTGCTCCTCCTCCTCCTCCTCCTCCAA AGTCCCCCCAAAATCGGCGCCTCCCCGTCCAATTCTCCGCCGCGATCCGCTCCCCGAACC CGCCGGAGCGCGCAGGACCGCGCGGGGACGCCCCGGGCGCGAATGCGCGCGCCCCCTGCG AGGGTTGGAGATTGTTGTCCTGCTACTGAGATGGATGAAGTGCCGGGTAATCAAGAAGAT CCCAGACTTGGGGCCTATGCCGACAAGATCACTGATGCGATGTTTGCGGACCATGTGGAG TTGGGGTCTCATTATGCAGGTGATTCTTCTTCAGAGGCAGGATGGGCTCCAATGATCGCG AGAATGCAGTCGCAGTCGCAGCTGGGGAGTAACCAGCTTGGTGTCTCCTTTGAGAATGGC AGTTTGCCAGATGACCCGGCGTCGTTGGCATCGGCATTCAAGAACATGAGCTTGGGATTC AGGGATTTTACTGTTGGCACTCCTGCTAATCCTGTCAGTGTTGCACCCCTAGGTGGACAT TATCCTGCAAGTCATGTGATTTCATCTGGTGAGACCACAATGAACTCATTTCATCAGCAG GAGTTTGCTCAAGATGGTTTCAGGCCTTCATCTCTGAATCCCAATGTTGCTGAATACATG AAGCCGAAGTACGGTGTACACAATGTTCAGATGTGCACCGGGCTGCATGGCTCGGATTAT GTTTCTGGGGACCCGTATAATCTACCATCATCAGCTTCACCTTTACAGAAACAGTATTTT ATTGATGGGCAATTCCGGGCTAATGCACCATATCAGCAGACTGGCTCGAATTTCATGAGG CAAGATTTTGATGCTGACAGTCATTATCTTTTGCAATCCCAGTATGCTTATCAGCAAATG CCACAGGTCGCTGGATCTGATGTTCATTGGGTTAGAAGCAACCAACATGGTGTTCACTCT TCTATCCCTGCAGCTTCACCTTATCTCAGGACACCAATGGTTGGTCAGCAAGCACATAGC AGTGCTGATACTTACTGGAATGGTGCTGCTATTTCACATGGAAACAACCAGCTGAATTCC ACATTTGTGAACAATTGCTCATGTATAATTTACCCTGATTGTTCACGCGAAATCTGCGAA TATTGCCAGATGAAGCAAGCAGAAAAGTTGAAGCATCGTTATATGTTCAGGCGTTCATCC AAAGGTTTCCTGCAGCCTCAGATTTTTGATAAGGTCAACATTAAATGTTTTCCTGGAAAG ACGATGGTGAAGTCTGATGATATAAATTCAGCGAGAAATATTCAGTCTGTCTTTGAACCT AATGGCCGCATTGAAATGAATCAGAGAATTAACCAGCATGGACACAATCAACATCTTAAT ATTCAGGGCAACGATTTCTTGCTTTTTGACAGGCTAAACTCCCAGGCTCTGTCACCTGTG GAATCTGAATATGGTTTGGCCATGAAAATTCCTCAAATGAGTTATAGTTCAGTAGATGAA GTTGTTGGGAAAATTCATCTCTTGGCAAAGGATCAGAATGGCTGCCGCTTCCTACAGAGG ATATTTACAGAAGGTACTTCGGAGAATGTTAAAAAGGTCTTTGATGGAATCATTGAACAT ATTGGTGAACTTGTGGTCGATCCATTTGGAAACTACTTGGTACAAAAGCTACTTGAAGAG TGCAACCATGATCAGAAGATGCATATAGTCTATGAAATAACCAAAAGACCAGGGCAGCTT ATTAAATTTTCATGCGACATGCATGGGACACGTGTAGTGCAAAAGGTGATAGAAACAATA AACTCGCCAGATGAAGTTTCCATGGTTGTATGTGCCCTGAGCTCTGGTGCCATCACTTTG ATGATGGATGCAAATGGCTGTCATGTTGCACTCCGCTGCTTGCAAAAATTCTCACATGAG CACAAAGCATTCCTTCTTAATGTGGCCATGGAATATTACTTTGAGCTAGCCCAGGATCGT CAAGGTTGTTGTATCATTCAAAAATGCATTCTTCATGCAAATAAGGAACAGAAGAACCAG TTGTTGTACAATATCACTTCCAGGGCTCTTGAGCTGTCAGAGCATCAGTATGGGAACTAT GTTGTACAGTATATTCTTGATCTCCACATTTCATGGGCGACAGATGAAATACTGGACAAG CTGGAAGATCATTTCGGATCTCTGTCGATGCAAAAAAGTAGCAGCAATGTGGTAGAGAAA TGTTTAAAAGAAGCATCGTGGCCTAAACGTGTTAAAATCATTCACGAGCTTATCAATGAC CCTAAGTTACTGCATATCTTGATCGACCCATATGGGAACTATGTGATCCAAACAGCGCTC AAGGAGTGTGAGGATGCTGCAGTACGCGCTGTGCTGATCGGAGCCATTAGGCCACATGTT GCTGCTCTTCGAAACAACATGTTTGGGAAGAGAATTCTGTCAAAAACTTACCTGAAGAAC AGGAAGCACTAATCTTGCACCTTTGGGCTTTTCTTCTGGAGTCCACCTGTCAGGCAATGT GCATAAGGTGCAACACTAATGTATCTGTAAGAATCATATGCTACAGAATAGATCCACTCA AATTAAGTAGATTAAGAAAGATG