Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0480000-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:17619427:17623993:1 gene:Os12g0480000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, DHHC-type domain containing protein. (Os12t0480000-01)
Sequence

ATGGCGTCCACATCCGCCGCGGAGCCTGGCGTCCGGTTCTCCGACCGAGCGGCGAGGAGG
TCGTCGCTGGGCCTGAGGTCGATGGTGCTCCTGATGCACGTGGTCTTCGTCGGCGCCGTC
TTCCTGCTCGATCCGACCCTCGACAGGCGAATCCGCGAGGAGCCCTGGTACATAGGGGCA
TATGGAGCGCTTGTTTTGATCGCCTTAGTGCAGTATTTCTACACAGCTGGTTCATCTCCT
GGGTATGTTCTCGATGCAATGAAAGCTGGTTCGACGATGCACGCAACCTACATCAATACT
GCCACTCTTTCGAAACAATCAAGTCCAAACAATGGTAGCTTAAATTCCCCTTTGAGCCTC
CCTCAACAGCAGAAACTTAATCCGACCACTTCTACATCAACATGGTTGCAGCGAGTTGCA
GAATTATACCCCCCTGGGTCAAGTAGCAGGGATTGGACTTGCACTTACTGCAGGGTTATT
CAGCCACCTCGTACTAGGCATTGCCATGACTGTGACAAATGTGTCCTTCAGTTTGATCAT
CACTGTGTTTGGCTTGGAACATGCATTGGGAAAAAGAACCACTGCAGATTCTGGTGGTAC
ATATTTGAAGAAACAATCCTGAGTATCTGGACAGTTGCTCTCTACATTGACTCGATACGT
TTAGATGTTGACAAGGCCTGGTGGAAGGATTTTATTGGCGTAATCCTGTTGGCTGTGTTG
ATCTTTATTCTCATATTCTTGCTACTATTGTTGATCTTTCATACTTACATCGCTCTTACA
AATCAAACAACCTACGAAGTTGCCCGAAGGAAGCGGATATTCTACATGAGGGGTATACCC
GACAAAGTTCATCCATTCAGTAAAGGCATCTGTAGGAACATCTACGTCTTCTGCTTCTCT
AGACAGAAGGGATATGATCTAGAAGAGGTGCCCCCACTTGAAGAGTTGGAAGCCAGAGCT
GCTCCCTACACATGCCGCGATATAATCTGCTGCCGGTGCTGTTGA

Peptide Sequence

PEP ID

Os12t0480000-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:17619427:17623993:1 gene:Os12g0480000 transcript:Os12t0480000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, DHHC-type domain containing protein. (Os12t0480000-01)
Sequence

MASTSAAEPGVRFSDRAARRSSLGLRSMVLLMHVVFVGAVFLLDPTLDRRIREEPWYIGA
YGALVLIALVQYFYTAGSSPGYVLDAMKAGSTMHATYINTATLSKQSSPNNGSLNSPLSL
PQQQKLNPTTSTSTWLQRVAELYPPGSSSRDWTCTYCRVIQPPRTRHCHDCDKCVLQFDH
HCVWLGTCIGKKNHCRFWWYIFEETILSIWTVALYIDSIRLDVDKAWWKDFIGVILLAVL
IFILIFLLLLLIFHTYIALTNQTTYEVARRKRIFYMRGIPDKVHPFSKGICRNIYVFCFS
RQKGYDLEEVPPLEELEARAAPYTCRDIICCRCC

Transcript Sequence

Transcript ID

Os12t0480000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:17619427:17623993:1 gene:Os12g0480000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, DHHC-type domain containing protein. (Os12t0480000-01)
Sequence

AAACCGGACCGCTCCTCCCACCAGAAGCGTCGTCGTCTCCGCCTCTGGAGGCAGCGACGC
CGGCCGGTTGCCGCCGCCGCCTACCCTTCCTCACTCCACCTCTCCGACTAATCGCCGCCG
CCTTCGCCGCCGCCGGAGGCCTAGAATGGCGTCCACATCCGCCGCGGAGCCTGGCGTCCG
GTTCTCCGACCGAGCGGCGAGGAGGTCGTCGCTGGGCCTGAGGTCGATGGTGCTCCTGAT
GCACGTGGTCTTCGTCGGCGCCGTCTTCCTGCTCGATCCGACCCTCGACAGGCGAATCCG
CGAGGAGCCCTGGTACATAGGGGCATATGGAGCGCTTGTTTTGATCGCCTTAGTGCAGTA
TTTCTACACAGCTGGTTCATCTCCTGGGTATGTTCTCGATGCAATGAAAGCTGGTTCGAC
GATGCACGCAACCTACATCAATACTGCCACTCTTTCGAAACAATCAAGTCCAAACAATGG
TAGCTTAAATTCCCCTTTGAGCCTCCCTCAACAGCAGAAACTTAATCCGACCACTTCTAC
ATCAACATGGTTGCAGCGAGTTGCAGAATTATACCCCCCTGGGTCAAGTAGCAGGGATTG
GACTTGCACTTACTGCAGGGTTATTCAGCCACCTCGTACTAGGCATTGCCATGACTGTGA
CAAATGTGTCCTTCAGTTTGATCATCACTGTGTTTGGCTTGGAACATGCATTGGGAAAAA
GAACCACTGCAGATTCTGGTGGTACATATTTGAAGAAACAATCCTGAGTATCTGGACAGT
TGCTCTCTACATTGACTCGATACGTTTAGATGTTGACAAGGCCTGGTGGAAGGATTTTAT
TGGCGTAATCCTGTTGGCTGTGTTGATCTTTATTCTCATATTCTTGCTACTATTGTTGAT
CTTTCATACTTACATCGCTCTTACAAATCAAACAACCTACGAAGTTGCCCGAAGGAAGCG
GATATTCTACATGAGGGGTATACCCGACAAAGTTCATCCATTCAGTAAAGGCATCTGTAG
GAACATCTACGTCTTCTGCTTCTCTAGACAGAAGGGATATGATCTAGAAGAGGTGCCCCC
ACTTGAAGAGTTGGAAGCCAGAGCTGCTCCCTACACATGCCGCGATATAATCTGCTGCCG
GTGCTGTTGATCTTGTACATGTCAATATATGTTACTACCATAGCATTCTTTTTTTCACAT
GTGGAAGCATATGCTTAGCCTGTGTAGTGTAATTCCTCTGCCTTCTTTTTTTTTAGCCTG
TGGAAGCATGCATGCCTTTTTCGTGAGCTGCACCTATGTGGTTGTTCATGTAAAGAGAGT
CAGGCCTGGTTGTTCATGTAAAGTACATGACCGCATGTACATTTTCAAGCACAAGACGTG
TGTCTGTGTGGGCTTAGATCCAATCGTTGTGGTAGATTAGTTCCACCATTTTTCTTTTTG
AAATCAGGGATGGTTGATTACTGATAAGTTGGTTTTGAGCACACAAGCTTTAGTAGGAAA
CCGTTACTACTTGTGTCGAAAATTTGTATTCTGAGTTCGAGTTGTGGCAGTAAATGTTAC
ACGTGGTATTTGTCGGACGTATTGTATTGTCAATGTCAGGCACGTACGCAATGCTGAAGA
CAAGTGCTGCGTGTTCTCGGTGGTTTTTTTGTATCAGATTTACCTCGTTGGCTTGCCATA
ATGTTGTTTGCTATTGCTGAGGCTGCGTT