Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0471100-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:16909020:16910848:1 gene:Os12g0471100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ATPase 2. (Os12t0471100-01)
Sequence

ATGGCATCTGTGGAGACGTGGGTAGGGTTCGGGTCGGCCCTGGCCGGCGTCGGCTTGCTT
TGGTCGAGGATGCCGGAGCACGTCCATGACGAGGCTAGGTACATCATCAGTAGCCTGGTC
CCCATGGCGATATCCTACTTCAACCCCTACGAGCAGATCACCGTGTCCGAGTACGGCGAG
GAGCGGTTCCGACGCAACAAGATGTTTGACGCCGTCTCCACCTACCTGAGCCGCGTGTGC
GCCGGTGGCGCCTGCAAGCTCAAGGCCGAGCTCTGCAACAACGGCAGGGACGACCCAATT
GTCACTCTGGACGAGAATCAGGAGGTCGTCGACAGCTTCGACGGCGCACGCATGTGGTGG
AGGCTGTGCCCCAAGGCCTCCAAGAACAAGGGGGCCATCACCGTCACCTACTACCCCGGG
GAAGCGGACAAGCCGCGCTGCTTCAAGCTAGTGTTTCACAAACGCCACCGCCAGCTCGTG
CTCAACTCCTACCTACCAAGCGTCGTCCGGCGTTGGCGCGAGCTAACCGCGATGAACCGG
CAGAGACGGCTGTTCACCAACCATGCCAATGAGGCGAAGAAGAGCGTGTGGACCAGTGTC
CCTTACAACCCCCCTGCAACGTTCGACATGCTCGCCATGGACCACGCCAAGAAGGTTGAG
ATCGTGGACGATCTCACAACGTTCCAGAAGGGGAAGGAGTACCACTCAAAGGTTGGCAAG
GCGTGGAAGCGGGGCTACCTTCTGCATGGGCCACCGGGCACGGGCAAGTCCACCATGATT
GGGGCCATGGCCAACTTCCTCGACTACGACGTCTACGACCTCGACCTAACTTCCGTCAAG
AACAACAGCGAGCTGCGGAAGCTATTCCTTGATACGACGGACAAGTCCATCATCGTTATA
GAGGACATTGACGCGATCGAGGTCGAACTCACTACCAAGCGCAAGGGCAAGAAGGCAGCC
AACGGCGACGAAATCCACGACAAGCGTATGCTGATAGAGTTTTCCGACAAGAACGATGAA
AAAAGCAAAGTGACTCTGTCGGGCCTGCTCAGCTTCGTCGACGGGCTGTGGTCGGCGTGC
GGCAGTGAGCGGATCTTCATGTTCACGACGAACCACATTGACCGGCTTGACCCAGCACTA
ATCCGGCCAGGGAGGATGGACAAGCACATCGAAATGTCTTACTGCCGCTTCGAGGCCTTC
AAGGTACTCGCCAAGAGCTACTTGGACATCACCGAGCACTCACTATTCGCTGAAATCGAG
CGGCTGCTCGACGACACTGACACAACTCCGGCAGACGTCGCCAATAACCTCATGCTGAGG
AGCAAGAGGAACGGTGAAATCAGTCGACTGCTCGACGAGATCGATGGGGCACCGCGGGCA
GATGTGGCCAAATGGTGCAAGAGGAAGAGAGACACGGACGAGTGCCTGGCAGGTTTCGTA
GAAATACTAAAGAAATCCAAGATGGAATCTGCAACAACTCCAATGGATTCAATGGAAGAA
GCCAAAGAGGAACGACCTAACGCAAAAGAAAGCTACAAAATGGGGCGGATATATGATGAG
AACTATAGGTTGGGAAATGCCAGCTAG

Peptide Sequence

PEP ID

Os12t0471100-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:16909020:16910848:1 gene:Os12g0471100 transcript:Os12t0471100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ATPase 2. (Os12t0471100-01)
Sequence

MASVETWVGFGSALAGVGLLWSRMPEHVHDEARYIISSLVPMAISYFNPYEQITVSEYGE
ERFRRNKMFDAVSTYLSRVCAGGACKLKAELCNNGRDDPIVTLDENQEVVDSFDGARMWW
RLCPKASKNKGAITVTYYPGEADKPRCFKLVFHKRHRQLVLNSYLPSVVRRWRELTAMNR
QRRLFTNHANEAKKSVWTSVPYNPPATFDMLAMDHAKKVEIVDDLTTFQKGKEYHSKVGK
AWKRGYLLHGPPGTGKSTMIGAMANFLDYDVYDLDLTSVKNNSELRKLFLDTTDKSIIVI
EDIDAIEVELTTKRKGKKAANGDEIHDKRMLIEFSDKNDEKSKVTLSGLLSFVDGLWSAC
GSERIFMFTTNHIDRLDPALIRPGRMDKHIEMSYCRFEAFKVLAKSYLDITEHSLFAEIE
RLLDDTDTTPADVANNLMLRSKRNGEISRLLDEIDGAPRADVAKWCKRKRDTDECLAGFV
EILKKSKMESATTPMDSMEEAKEERPNAKESYKMGRIYDENYRLGNAS

Transcript Sequence

Transcript ID

Os12t0471100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:16909020:16910848:1 gene:Os12g0471100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ATPase 2. (Os12t0471100-01)
Sequence

AACGGTAAACAAGCACACATCCACACACAAGCACACATCCACACAACGGCAATTAATCAT
TGCAGAGAGCTAGCAGCTAGGTTAGTTAGGTGAGCAGTGGCTGCAAGGGGCAAGCCATGG
CATCTGTGGAGACGTGGGTAGGGTTCGGGTCGGCCCTGGCCGGCGTCGGCTTGCTTTGGT
CGAGGATGCCGGAGCACGTCCATGACGAGGCTAGGTACATCATCAGTAGCCTGGTCCCCA
TGGCGATATCCTACTTCAACCCCTACGAGCAGATCACCGTGTCCGAGTACGGCGAGGAGC
GGTTCCGACGCAACAAGATGTTTGACGCCGTCTCCACCTACCTGAGCCGCGTGTGCGCCG
GTGGCGCCTGCAAGCTCAAGGCCGAGCTCTGCAACAACGGCAGGGACGACCCAATTGTCA
CTCTGGACGAGAATCAGGAGGTCGTCGACAGCTTCGACGGCGCACGCATGTGGTGGAGGC
TGTGCCCCAAGGCCTCCAAGAACAAGGGGGCCATCACCGTCACCTACTACCCCGGGGAAG
CGGACAAGCCGCGCTGCTTCAAGCTAGTGTTTCACAAACGCCACCGCCAGCTCGTGCTCA
ACTCCTACCTACCAAGCGTCGTCCGGCGTTGGCGCGAGCTAACCGCGATGAACCGGCAGA
GACGGCTGTTCACCAACCATGCCAATGAGGCGAAGAAGAGCGTGTGGACCAGTGTCCCTT
ACAACCCCCCTGCAACGTTCGACATGCTCGCCATGGACCACGCCAAGAAGGTTGAGATCG
TGGACGATCTCACAACGTTCCAGAAGGGGAAGGAGTACCACTCAAAGGTTGGCAAGGCGT
GGAAGCGGGGCTACCTTCTGCATGGGCCACCGGGCACGGGCAAGTCCACCATGATTGGGG
CCATGGCCAACTTCCTCGACTACGACGTCTACGACCTCGACCTAACTTCCGTCAAGAACA
ACAGCGAGCTGCGGAAGCTATTCCTTGATACGACGGACAAGTCCATCATCGTTATAGAGG
ACATTGACGCGATCGAGGTCGAACTCACTACCAAGCGCAAGGGCAAGAAGGCAGCCAACG
GCGACGAAATCCACGACAAGCGTATGCTGATAGAGTTTTCCGACAAGAACGATGAAAAAA
GCAAAGTGACTCTGTCGGGCCTGCTCAGCTTCGTCGACGGGCTGTGGTCGGCGTGCGGCA
GTGAGCGGATCTTCATGTTCACGACGAACCACATTGACCGGCTTGACCCAGCACTAATCC
GGCCAGGGAGGATGGACAAGCACATCGAAATGTCTTACTGCCGCTTCGAGGCCTTCAAGG
TACTCGCCAAGAGCTACTTGGACATCACCGAGCACTCACTATTCGCTGAAATCGAGCGGC
TGCTCGACGACACTGACACAACTCCGGCAGACGTCGCCAATAACCTCATGCTGAGGAGCA
AGAGGAACGGTGAAATCAGTCGACTGCTCGACGAGATCGATGGGGCACCGCGGGCAGATG
TGGCCAAATGGTGCAAGAGGAAGAGAGACACGGACGAGTGCCTGGCAGGTTTCGTAGAAA
TACTAAAGAAATCCAAGATGGAATCTGCAACAACTCCAATGGATTCAATGGAAGAAGCCA
AAGAGGAACGACCTAACGCAAAAGAAAGCTACAAAATGGGGCGGATATATGATGAGAACT
ATAGGTTGGGAAATGCCAGCTAGACTCCTTGTTTTGTGTTTGCTATTTTACCAGACTTGC
GTGTTTACTAGTCACTTAAGGTTTCAAAGCCATACATAAAATGGAATAATATAAAATTAG
TGGTGTAACACTACTTATTTTCTCGATCT