Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0467300-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:16589263:16595997:-1 gene:Os12g0467300 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os12t0467300-01)
Sequence

ATGATGGCAGCAGTGAACTCTTCCATGGGGGTCATGGCGCCACTCCTCACCAAACTTGCC
ATGCTGCTCAGCAACAAGTGCAAGAAACTCAAGGGAATGCGTAAGAACATTGAGTTCCTT
AGCCATGAGTTGACCGAAATGAATGCTGTGTTGGAGAATCTTGCAGATATGGAGAAGCTA
GATGGACAGCAGAAGCTGTGGAGGAATGACATCCGCGAGATGGTCTACGACATCGAGGAC
TGCATTGATGTCTTCATGTACCATCTTGGTGATGGTAATAACAAGGATGGCTTGCTCAGG
AAGACTGCACGCAAGCTCAGGAATTTGCGTGCTCGCTATCAGATTGCCGACAAGATTCAA
GAACTCAAGGCTCGTGTCATGCAGGTGGCTGAGCGCCGTGATAGGTATGCCAATCTAGGT
GTATCTACCTCAAGCATTCCCAAAGTGGTGGAAGTTGATCCGCGTCTACCTGCACTCTAT
GAAGATGCAAAAAATCTTGTGGGCATTGACGGTCCATGTATGGAAATTACTCAGTGGCTA
ATGGATGAAGTAGAGAATGGTTCGATACAACAACTTAAAGTTCTCTCTGTAGTTGGCTTT
GGAGGCATTGGCAAGACAACTCTTGCCAAACAAGTATACAACCAATTGAAAAAACGATTC
AATTTCACATCATTCGTGTCAGTGTCTCAAAACCCTGACATGGTTAAGCTGCTGAGAAAT
TTACTTTCAGGAACAGGATTTCAAGGCTACGGAATTCTTGATGACCATCAAAAGCTCATT
GACACCCTCAGAGGACATCTTGCTAATAAGAGGTACCTTATTGTAGTTGATGACATATGG
AACACTCAAGCATGGAGCATTATTCGGTGTGCTTTTGCTCAAAATAATCATGGTAGCAGA
GTTATAGTTACAACAAGAATCGAAGATGTAGCTACAAAGTGTTGCGTTGATTTCCATGGT
ATGGTGTACAAGATGGAGCCACTTAATGAGTTTAACTCACAAAAGTTATTTTGTAAAAGG
ATATTTGATTCGGATAGTATTCCTGAGCAGTATAAAAATGTATCAGAAGATATGTTAAGA
AAATGCAAAGGTGTCCCATTGGCAATCATTAGCATTGCTAGCCTTTTATCCAGTGAAGGC
ATGAATGTGGGTAAGTGGAAGAAGATTCATAACTTTATGGGTTCTGAGTCGGAAACAAAT
CCCACTCTAGAATGGATGAGACATGTACTGAATCTGAGCTACCTTGACCTCTCACATAAT
CTCAAGACATGCTTCCTGTATCTAGGAATATATCCTGAAGACCATACAATTTTCAAAGCT
GATTTGATAAGGCTATGGATAGCTGAAGGATTTATCCATGAGAAACCTGGTTTGGATCTG
GAGGAAACAGCTGAGAGCTATTTCAACGAACTCATTAATAGGAGTATGATTAAGCTAGAT
GATTATCGTTCCAGTGAGGCATGTCATGTCCATGACCTTATGCTTGACCTTATAATATCG
AAGTGCCAGGAGGAAAACTTCATCACTATAGCATCTAAGCAGCCTGTAAAGAATGTAACA
AAGCTTCCAGTTCGTCGTCTGTGCCATCAGTTGTCATACGGAAACTTGGCCATGGAAAGA
ATGAAACTATCACAGGTTCGATCCTATAATACTTTCCCTGCGTTTGGCTGCAGTATGCAG
CCTCCTATTTCTATGTTTGAGCATTTGCGGGTATTGGAACTTAGGGCCTATTCTACATCC
GTTTTCCTTGATTTGTCTGCTGTGAGCAACCTCTTCCTGTTGAGACACTTGAGTATCAGA
GGTTTCAGGTTAAAGCTGCCTCAGAAAATTGGGAGACTCCAGTGTTTGAGGACACTAGAT
CTACTAGGCAGCCTTTTGGTTACTGGTTTTCCATCAGATGTTATTTCTCTATCATCATTG
TGTCATCTAACAGTTTCAGGTGATGCAGTGCTGCCTAATGGGATTCAGAAACTGGTCTCT
CTACAAACTTTGTTGACCTTTAATTCAGGGGGTTTGCCCGACATTTTTACTATTGTGGAG
AAAATTTCTCGATTTAATTCATCTGCTATCAGACTGGCAAAAACACGTCGTTTCAACAAT
GGAGGTCTTCGTTCTACCAATGGAGGTCTTCGTTCTCCCCCTGCCTCCCTTGAGTTTCCA
AGTTTCGATGATGGTTGGCCAACTGAATCCATTCTGGACTACCTATCTCAGCATCTGGAT
ACACCAGCTTCCTCACATTCGGACCTCTTCTCGCCAAATTTGGTTGCTTGTTCACCGCAT
ATTCTGAATTTTGCATCGTTATGGCTTCAGCAACTCATCATCCGTAAGAACATTCGCAAT
GTCCCATCCTGGCTGTGGTTTTCTCTGAAGCTCACAATGCTAGAGCTTCGTGTTGAGGAG
CTCAGTTGCCGCGACGTCCAATTTCTTGCTGGGCTGCCCTGCCTTGTTGACCTCGACTTG
ACTGCTCAAGCTACCCCTGAGAACATCATCACTAAACGCGTTACCACGCGTTTGGGAAGA
ATCACCCATACCGACAATTTCCCAAAGCTGCAGAAATTTGTTTTAACATGTGATTTGGCA
TGCCTGACGTTTGAGCCAGGGGCAATGCCACAGCTTCAGATTCTGAAGCTAGATGACAAG
AAGCCTTCTAACTTGGAGGAAGGGCATGGCACCAGTGGAGCGGCGCAACATGGCAAAACT
CCACTTATTGGCATCGAGCACCTACCAAGGCTTGAAGAGGTCCAAGTGACAAGCCACTCC
AGCAAGGTGCCTGCATACAGGGACGCCGTCCAAAGGCATCCAAGGTTTCAAGACATACGT
GCCACGTTTAATATCTATAATTGA

Peptide Sequence

PEP ID

Os12t0467300-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:16589263:16595997:-1 gene:Os12g0467300 transcript:Os12t0467300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os12t0467300-01)
Sequence

MMAAVNSSMGVMAPLLTKLAMLLSNKCKKLKGMRKNIEFLSHELTEMNAVLENLADMEKL
DGQQKLWRNDIREMVYDIEDCIDVFMYHLGDGNNKDGLLRKTARKLRNLRARYQIADKIQ
ELKARVMQVAERRDRYANLGVSTSSIPKVVEVDPRLPALYEDAKNLVGIDGPCMEITQWL
MDEVENGSIQQLKVLSVVGFGGIGKTTLAKQVYNQLKKRFNFTSFVSVSQNPDMVKLLRN
LLSGTGFQGYGILDDHQKLIDTLRGHLANKRYLIVVDDIWNTQAWSIIRCAFAQNNHGSR
VIVTTRIEDVATKCCVDFHGMVYKMEPLNEFNSQKLFCKRIFDSDSIPEQYKNVSEDMLR
KCKGVPLAIISIASLLSSEGMNVGKWKKIHNFMGSESETNPTLEWMRHVLNLSYLDLSHN
LKTCFLYLGIYPEDHTIFKADLIRLWIAEGFIHEKPGLDLEETAESYFNELINRSMIKLD
DYRSSEACHVHDLMLDLIISKCQEENFITIASKQPVKNVTKLPVRRLCHQLSYGNLAMER
MKLSQVRSYNTFPAFGCSMQPPISMFEHLRVLELRAYSTSVFLDLSAVSNLFLLRHLSIR
GFRLKLPQKIGRLQCLRTLDLLGSLLVTGFPSDVISLSSLCHLTVSGDAVLPNGIQKLVS
LQTLLTFNSGGLPDIFTIVEKISRFNSSAIRLAKTRRFNNGGLRSTNGGLRSPPASLEFP
SFDDGWPTESILDYLSQHLDTPASSHSDLFSPNLVACSPHILNFASLWLQQLIIRKNIRN
VPSWLWFSLKLTMLELRVEELSCRDVQFLAGLPCLVDLDLTAQATPENIITKRVTTRLGR
ITHTDNFPKLQKFVLTCDLACLTFEPGAMPQLQILKLDDKKPSNLEEGHGTSGAAQHGKT
PLIGIEHLPRLEEVQVTSHSSKVPAYRDAVQRHPRFQDIRATFNIYN

Transcript Sequence

Transcript ID

Os12t0467300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:16589263:16595997:-1 gene:Os12g0467300 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os12t0467300-01)
Sequence

ATTCCCCACTGATCCGCAGAAACCCGACTCCTCGATCCCCAGTTCCCCACCTCGTCTCCT
CGAGCGCTCGCCGGCGGGCGGTTCGCCGGCGGCGCGGCGGAGCACGTGCTCCTCTTCCCC
GATCTCCTCCTCCGCGTCGTGGCCGCCAAGCTCTAGACGGGACAGGACGCCATCCATCCT
CCAGGTTATCCACTTCCGCTCCCTTCTGCTGGTAAGCGCTCCGCCGTCGCCTCAATCTGT
CGTGGGATCGAGCTCCGCACCGGTGCCTCCGATCCGTACGTCGGTCTCCGGGCCGAAGGC
GGACGGTGGTCGGGGATGGATCGGCCCCAACGCCGGCGTCGTGGCCGGGCTTCGGATGAA
TGGTGTGCGGGTGACGGGCCTGTAGTCCGTCCGTCCGTCTGCTGATCTGCATCACGCGGC
CAACAAGTCAATAGATAGTGAACTGTAGTACTGTACCACTACCAATACTGACATATTCTG
AAGACAAAACAAACCAATTCTGGGAAATTGTAGACGAGATTCCAAGAAATTTCGTGACTC
TTGTCTGATTCTGATGTCCATCAAGAGGATGCAAAGCACCAAGTTGGGTCGTCATCAGCA
CGTATGCCAGGTGACGGGAGGACACAGTGACGGCTCATGATTTGGTTCGTCGTTCCATCG
GCCTAATTTTTTCCTTTTGCCATACTTGTTAGTAGTTGAGCTGTCTTAATCGGCCTAATT
TTCTTCGTTTAGTCGTCTTAATAAAATTATTGTTCGTTTAGCTAGGTGGGTCGTCTGGTC
TAGTGCTTAATTTGGGTATTGCTGGCTTTACATAAGTGGGATATTTAATATTGTTGCTAT
GATTATCCAGTTTTGTCATTTCTTGATGATGGAACATATAATGGCCAACATGTCAATCAA
TAGCAGGCCCCAAAGGCATCCACTCTGACCAGCTAGCCCATTGAGCAAAGGCGAGCAAAC
ACATTGGTTTTATGATGGCAGCAGTGAACTCTTCCATGGGGGTCATGGCGCCACTCCTCA
CCAAACTTGCCATGCTGCTCAGCAACAAGTGCAAGAAACTCAAGGGAATGCGTAAGAACA
TTGAGTTCCTTAGCCATGAGTTGACCGAAATGAATGCTGTGTTGGAGAATCTTGCAGATA
TGGAGAAGCTAGATGGACAGCAGAAGCTGTGGAGGAATGACATCCGCGAGATGGTCTACG
ACATCGAGGACTGCATTGATGTCTTCATGTACCATCTTGGTGATGGTAATAACAAGGATG
GCTTGCTCAGGAAGACTGCACGCAAGCTCAGGAATTTGCGTGCTCGCTATCAGATTGCCG
ACAAGATTCAAGAACTCAAGGCTCGTGTCATGCAGGTGGCTGAGCGCCGTGATAGGTATG
CCAATCTAGGTGTATCTACCTCAAGCATTCCCAAAGTGGTGGAAGTTGATCCGCGTCTAC
CTGCACTCTATGAAGATGCAAAAAATCTTGTGGGCATTGACGGTCCATGTATGGAAATTA
CTCAGTGGCTAATGGATGAAGTAGAGAATGGTTCGATACAACAACTTAAAGTTCTCTCTG
TAGTTGGCTTTGGAGGCATTGGCAAGACAACTCTTGCCAAACAAGTATACAACCAATTGA
AAAAACGATTCAATTTCACATCATTCGTGTCAGTGTCTCAAAACCCTGACATGGTTAAGC
TGCTGAGAAATTTACTTTCAGGAACAGGATTTCAAGGCTACGGAATTCTTGATGACCATC
AAAAGCTCATTGACACCCTCAGAGGACATCTTGCTAATAAGAGGTACCTTATTGTAGTTG
ATGACATATGGAACACTCAAGCATGGAGCATTATTCGGTGTGCTTTTGCTCAAAATAATC
ATGGTAGCAGAGTTATAGTTACAACAAGAATCGAAGATGTAGCTACAAAGTGTTGCGTTG
ATTTCCATGGTATGGTGTACAAGATGGAGCCACTTAATGAGTTTAACTCACAAAAGTTAT
TTTGTAAAAGGATATTTGATTCGGATAGTATTCCTGAGCAGTATAAAAATGTATCAGAAG
ATATGTTAAGAAAATGCAAAGGTGTCCCATTGGCAATCATTAGCATTGCTAGCCTTTTAT
CCAGTGAAGGCATGAATGTGGGTAAGTGGAAGAAGATTCATAACTTTATGGGTTCTGAGT
CGGAAACAAATCCCACTCTAGAATGGATGAGACATGTACTGAATCTGAGCTACCTTGACC
TCTCACATAATCTCAAGACATGCTTCCTGTATCTAGGAATATATCCTGAAGACCATACAA
TTTTCAAAGCTGATTTGATAAGGCTATGGATAGCTGAAGGATTTATCCATGAGAAACCTG
GTTTGGATCTGGAGGAAACAGCTGAGAGCTATTTCAACGAACTCATTAATAGGAGTATGA
TTAAGCTAGATGATTATCGTTCCAGTGAGGCATGTCATGTCCATGACCTTATGCTTGACC
TTATAATATCGAAGTGCCAGGAGGAAAACTTCATCACTATAGCATCTAAGCAGCCTGTAA
AGAATGTAACAAAGCTTCCAGTTCGTCGTCTGTGCCATCAGTTGTCATACGGAAACTTGG
CCATGGAAAGAATGAAACTATCACAGGTTCGATCCTATAATACTTTCCCTGCGTTTGGCT
GCAGTATGCAGCCTCCTATTTCTATGTTTGAGCATTTGCGGGTATTGGAACTTAGGGCCT
ATTCTACATCCGTTTTCCTTGATTTGTCTGCTGTGAGCAACCTCTTCCTGTTGAGACACT
TGAGTATCAGAGGTTTCAGGTTAAAGCTGCCTCAGAAAATTGGGAGACTCCAGTGTTTGA
GGACACTAGATCTACTAGGCAGCCTTTTGGTTACTGGTTTTCCATCAGATGTTATTTCTC
TATCATCATTGTGTCATCTAACAGTTTCAGGTGATGCAGTGCTGCCTAATGGGATTCAGA
AACTGGTCTCTCTACAAACTTTGTTGACCTTTAATTCAGGGGGTTTGCCCGACATTTTTA
CTATTGTGGAGAAAATTTCTCGATTTAATTCATCTGCTATCAGACTGGCAAAAACACGTC
GTTTCAACAATGGAGGTCTTCGTTCTACCAATGGAGGTCTTCGTTCTCCCCCTGCCTCCC
TTGAGTTTCCAAGTTTCGATGATGGTTGGCCAACTGAATCCATTCTGGACTACCTATCTC
AGCATCTGGATACACCAGCTTCCTCACATTCGGACCTCTTCTCGCCAAATTTGGTTGCTT
GTTCACCGCATATTCTGAATTTTGCATCGTTATGGCTTCAGCAACTCATCATCCGTAAGA
ACATTCGCAATGTCCCATCCTGGCTGTGGTTTTCTCTGAAGCTCACAATGCTAGAGCTTC
GTGTTGAGGAGCTCAGTTGCCGCGACGTCCAATTTCTTGCTGGGCTGCCCTGCCTTGTTG
ACCTCGACTTGACTGCTCAAGCTACCCCTGAGAACATCATCACTAAACGCGTTACCACGC
GTTTGGGAAGAATCACCCATACCGACAATTTCCCAAAGCTGCAGAAATTTGTTTTAACAT
GTGATTTGGCATGCCTGACGTTTGAGCCAGGGGCAATGCCACAGCTTCAGATTCTGAAGC
TAGATGACAAGAAGCCTTCTAACTTGGAGGAAGGGCATGGCACCAGTGGAGCGGCGCAAC
ATGGCAAAACTCCACTTATTGGCATCGAGCACCTACCAAGGCTTGAAGAGGTCCAAGTGA
CAAGCCACTCCAGCAAGGTGCCTGCATACAGGGACGCCGTCCAAAGGCATCCAAGGTTTC
AAGACATACGTGCCACGTTTAATATCTATAATTGAAGTACAAGGACTCAGAAAATAGCGC
TGAAAGACGCTCTCGGCGATGAATACAAGCTACTCAAGGGGGTTCAAAAAGAGATTGCAA
TCCTGAAGCATGAGCTGAGCTGCCTAATTCCCTTCTCCAGAAGCTTATCGACTTAGGAGT
GGAAGGACAAGGTGCGGGAACTGGCCTACGATATTGAGGACTGTATCGACATCTTCCTGC
ACCAACTTCATCCTAGAGAGGACAAGGATAGACTGGTCTGGAAGGCGGTCCGGAAGATCA
AAGCAACTATGTGCCTGCCCGCCATCAAATCGCCCTCCAAATTCAAGAACTCAAGGCACA
TGTCGATATACATGATCGATGTATCAACCTCTGGCGATAGGTTCATAAGGATTTGATTCC
CGATTGTCGTTGCTTTATGCAGAAGCTGGAGGCCTTGTTGGCATTTGTAGGTTGTTTAGG
GCCTGTTTAGTTCGCGAAAAGAAAATTTTTGATTGTCACATCGGACGTTTGACCGAATAT
CGGAAGGGGTTTTCGGACACG