Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0446900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:15130136:15140357:1 gene:Os12g0446900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to bifunctional dihydrofolate reductase-thymidylate synthase. (Os12t0446900-01)
Sequence

ATGTCTACAAATGTTAACAATGGTAACTCAGAGAGCAACCTTAAGAGAAGTTATCAAGTT
GTGGTTTCTGCTACTCGCGACATGGGTATTGGGAAGGATGGGACGCTGCCATGGAAGCTG
CCGGGTGACCTGAAGTTTTTTAAAGATATTACAGTGACTACGTCAGACCCTTCAAAGAAA
AATGCTGTTGTAATGGGAAGGAAAACATGGGAAAGCATACCCCTTAAGTTTAGACCACTC
CCTGGTCGTTTGAATGTAATATTGACTCGTTCTGGGAGTTTTGATTTTGCAACTGCAGAA
AATGTTGTTATCTGTGGGAGTTTGGATTCTGCCTTGCAACTGCTAGCAACAACTCCATAC
TGTTTGACAGTTGAGAAAACTTTTATAATAGGAGGTGGCGAGATTCTGAGGCAATCTTTA
AATGCGCCTGCTTGTGAGGCCATCCATCTTACCGACATAGAGTCCAGCATTGAATGTGAT
ACTTTCATTCCTCCAATTGATCTCTCCATGTTCCACCCATGGTATTCATCATTTCCAGTG
GTAGAAAACGGCATCAAGCATTCTTTCATTTCCTTTGTTCGTGTTACAAAATCAATTGCA
GAAGCTAATGATTCTAGTGGCAAGGAATTGACTGGAAATGATTCTAAGAAGGTCAAGTTT
GAAATTGAGAATTTTTCCTTTTTACCTAAAATGATATTTGAAAGGCACGAGGAGTATCAA
TATCTCAATCTTGTTCAAGATATAATAAGAAATGGTGCTAAGAAAAATGACAGAACAGGA
ACAGGGACAGTATCAAAGTTTGGTTGCCAGATGCGGTTCAACTTAAGGAGGAACTTTCCA
TTGCTCACAACGAAGAGGGTATTTTGGCGTGGTGTTCTTGAAGAGCTATTGTGGTTCATT
AGTGGCTCAACAAATGCAAAGGTTTTACAGGAGAAAGGTATTCACATATGGGATGGCAAT
GCTTCAAGGCAGTATCTTGACAGTATTGGTTTAACACAAAGGGAGGAGGGGGACTTGGGA
CCAGTTTATGGATTTCAGTGGAGACACTTTGGTGCTGAATATACTGACATGCATGCTGAC
TACGTGGGAAAAGGTTTTGATCAGTTAATGGATGTCATTGACAAGATCAAGAATAATCCC
GATGATAGAAGAATCATTTTATCTGCATGGAATCCAACAGACCTGAAAAAGATGGCCCTG
CCACCATGCCACATGTTTGCTCAGTTTTATGTTGAGAATGGGGAGTTGTCATGCCAGATG
TACCAACGCTCTGCTGATATGGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTT
CTGACATGTATGATTGCACAAGTGTGTGATCTTTCTCCTGGGGATTTTGTCCATGTTATA
GGTGATGCCCATGTTTACCGTACGCATGTTGAAGCGTTAGAGGAGCAAATGCGGAAGCAG
CCTAAACCATTCCCTATTTTGAAGATAAATCCTGTGAAGAAAGATATTGATTCTTTTGTA
ACATCAGACTTCAAACTGGTTCGCTATGATCCTCACCATAAGATAGAAATGAAGATGGCA
GTATGA

Peptide Sequence

PEP ID

Os12t0446900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:15130136:15140357:1 gene:Os12g0446900 transcript:Os12t0446900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to bifunctional dihydrofolate reductase-thymidylate synthase. (Os12t0446900-01)
Sequence

MSTNVNNGNSESNLKRSYQVVVSATRDMGIGKDGTLPWKLPGDLKFFKDITVTTSDPSKK
NAVVMGRKTWESIPLKFRPLPGRLNVILTRSGSFDFATAENVVICGSLDSALQLLATTPY
CLTVEKTFIIGGGEILRQSLNAPACEAIHLTDIESSIECDTFIPPIDLSMFHPWYSSFPV
VENGIKHSFISFVRVTKSIAEANDSSGKELTGNDSKKVKFEIENFSFLPKMIFERHEEYQ
YLNLVQDIIRNGAKKNDRTGTGTVSKFGCQMRFNLRRNFPLLTTKRVFWRGVLEELLWFI
SGSTNAKVLQEKGIHIWDGNASRQYLDSIGLTQREEGDLGPVYGFQWRHFGAEYTDMHAD
YVGKGFDQLMDVIDKIKNNPDDRRIILSAWNPTDLKKMALPPCHMFAQFYVENGELSCQM
YQRSADMGLGVPFNIASYSLLTCMIAQVCDLSPGDFVHVIGDAHVYRTHVEALEEQMRKQ
PKPFPILKINPVKKDIDSFVTSDFKLVRYDPHHKIEMKMAV

Transcript Sequence

Transcript ID

Os12t0446900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:15130136:15140357:1 gene:Os12g0446900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to bifunctional dihydrofolate reductase-thymidylate synthase. (Os12t0446900-01)
Sequence

GCCAAAAAAAAGAAAAAAAAACGCGGCTCCTCGCGCCTCCCCCCGACCACCACCTCGGCG
ATTCGACGGCGACCGCTCGCTGCTGGCCTCCGCCGGCTTGGTTTCGGCTCGCGGCGCCAT
CTCGGGCCACACATTTTTTCAGAAAGAGTAACATCCTGATCTTGAGACTTCAAAGTCTCA
AATATCTTGAATTCAGGGACAAACTCAATTTCTCCCGCTTTCACAAATCTCAAGTGATAG
TCATGTCTACAAATGTTAACAATGGTAACTCAGAGAGCAACCTTAAGAGAAGTTATCAAG
TTGTGGTTTCTGCTACTCGCGACATGGGTATTGGGAAGGATGGGACGCTGCCATGGAAGC
TGCCGGGTGACCTGAAGTTTTTTAAAGATATTACAGTGACTACGTCAGACCCTTCAAAGA
AAAATGCTGTTGTAATGGGAAGGAAAACATGGGAAAGCATACCCCTTAAGTTTAGACCAC
TCCCTGGTCGTTTGAATGTAATATTGACTCGTTCTGGGAGTTTTGATTTTGCAACTGCAG
AAAATGTTGTTATCTGTGGGAGTTTGGATTCTGCCTTGCAACTGCTAGCAACAACTCCAT
ACTGTTTGACAGTTGAGAAAACTTTTATAATAGGAGGTGGCGAGATTCTGAGGCAATCTT
TAAATGCGCCTGCTTGTGAGGCCATCCATCTTACCGACATAGAGTCCAGCATTGAATGTG
ATACTTTCATTCCTCCAATTGATCTCTCCATGTTCCACCCATGGTATTCATCATTTCCAG
TGGTAGAAAACGGCATCAAGCATTCTTTCATTTCCTTTGTTCGTGTTACAAAATCAATTG
CAGAAGCTAATGATTCTAGTGGCAAGGAATTGACTGGAAATGATTCTAAGAAGGTCAAGT
TTGAAATTGAGAATTTTTCCTTTTTACCTAAAATGATATTTGAAAGGCACGAGGAGTATC
AATATCTCAATCTTGTTCAAGATATAATAAGAAATGGTGCTAAGAAAAATGACAGAACAG
GAACAGGGACAGTATCAAAGTTTGGTTGCCAGATGCGGTTCAACTTAAGGAGGAACTTTC
CATTGCTCACAACGAAGAGGGTATTTTGGCGTGGTGTTCTTGAAGAGCTATTGTGGTTCA
TTAGTGGCTCAACAAATGCAAAGGTTTTACAGGAGAAAGGTATTCACATATGGGATGGCA
ATGCTTCAAGGCAGTATCTTGACAGTATTGGTTTAACACAAAGGGAGGAGGGGGACTTGG
GACCAGTTTATGGATTTCAGTGGAGACACTTTGGTGCTGAATATACTGACATGCATGCTG
ACTACGTGGGAAAAGGTTTTGATCAGTTAATGGATGTCATTGACAAGATCAAGAATAATC
CCGATGATAGAAGAATCATTTTATCTGCATGGAATCCAACAGACCTGAAAAAGATGGCCC
TGCCACCATGCCACATGTTTGCTCAGTTTTATGTTGAGAATGGGGAGTTGTCATGCCAGA
TGTACCAACGCTCTGCTGATATGGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTC
TTCTGACATGTATGATTGCACAAGTGTGTGATCTTTCTCCTGGGGATTTTGTCCATGTTA
TAGGTGATGCCCATGTTTACCGTACGCATGTTGAAGCGTTAGAGGAGCAAATGCGGAAGC
AGCCTAAACCATTCCCTATTTTGAAGATAAATCCTGTGAAGAAAGATATTGATTCTTTTG
TAACATCAGACTTCAAACTGGTTCGCTATGATCCTCACCATAAGATAGAAATGAAGATGG
CAGTATGAGTTGGTAGCTTCTATTTGCAGACTTCTGTTGTATATTTGATGGCAAATTGAT
ATGGTTGATTGGATTGAAGTGCCTTGTCATCCTGTCTTACAAATATGTCTTACAAATTGA
TATATTTGCTGTTGTACTGGATGATTGGTATAAGATGGATCATTTCCACC