Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0446700-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:15127532:15129908:-1 gene:Os12g0446700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1649 family protein. (Os12t0446700-01)
Sequence

ATGAACTGCGAGACGTGCCAGCTGAAGGAGCTGGAGCTGGAACAGGATGAGATCAAAGAT
GTGCTTCGATGCATTTTACATACGATCTTCTTCCACCGAACTCTTACTCTTGTTCGGCCT
AAAGATGTTGACTGCGATCTCTTTGAGATCACCTATGTTCAATGCGGACTTCCTGACTTA
GAAAAGGAGGTGGATGAAAAGATCAACCAGTTCATTGCTTGGGTGGAGAAGCATCCAAAT
CGAAGAAGCCAGGTCTGCCTGTCCTTCTTTGACGAAAAGAACAAAAACCCAAGCTGGTTC
ACCAGCAAAACTGAGAGGATTTACTGGGAACAGTGGTTCATCAATTTGCATGTCATAAGC
CCTAAAGGACATGGAAAATCACGTAGCTCCAAAGCATCAACAAGTATTCGAGGGAAAGCG
TTGGAAGAGGCCAGCTCCAAGCGTGCTGCGCTGGGGTTGCTGATCCAGGAAGTCCTTTTC
CAGATCATCAACTTCGCCAATGAGAAAAAAGACCATATTCCTCCAATCTCCGATAGGATA
TTCAATCACGAGATCTCGATCCCCAGGTGA

Peptide Sequence

PEP ID

Os12t0446700-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:15127532:15129908:-1 gene:Os12g0446700 transcript:Os12t0446700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1649 family protein. (Os12t0446700-01)
Sequence

MNCETCQLKELELEQDEIKDVLRCILHTIFFHRTLTLVRPKDVDCDLFEITYVQCGLPDL
EKEVDEKINQFIAWVEKHPNRRSQVCLSFFDEKNKNPSWFTSKTERIYWEQWFINLHVIS
PKGHGKSRSSKASTSIRGKALEEASSKRAALGLLIQEVLFQIINFANEKKDHIPPISDRI
FNHEISIPR

Transcript Sequence

Transcript ID

Os12t0446700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:15127532:15129908:-1 gene:Os12g0446700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1649 family protein. (Os12t0446700-01)
Sequence

ATATTTATATGTGGAAAAAATTAAAATAAAATCGGATTCTTCTCTTCTCGTGGGGATTCC
GGCGAGGATTTCGGCGAGCAGGGGGGCGATCGATCGAGAGCGTCCGCCGCCGCCGCCGCG
GAGGTAGGAGGGAGGGGAGAGAGACCGGTCGCGATGAACTGCGAGACGTGCCAGCTGAAG
GAGCTGGAGCTGGAACAGGATGAGATCAAAGATGTGCTTCGATGCATTTTACATACGATC
TTCTTCCACCGAACTCTTACTCTTGTTCGGCCTAAAGATGTTGACTGCGATCTCTTTGAG
ATCACCTATGTTCAATGCGGACTTCCTGACTTAGAAAAGGAGGTGGATGAAAAGATCAAC
CAGTTCATTGCTTGGGTGGAGAAGCATCCAAATCGAAGAAGCCAGGTCTGCCTGTCCTTC
TTTGACGAAAAGAACAAAAACCCAAGCTGGTTCACCAGCAAAACTGAGAGGATTTACTGG
GAACAGTGGTTCATCAATTTGCATGTCATAAGCCCTAAAGGACATGGAAAATCACGTAGC
TCCAAAGCATCAACAAGTATTCGAGGGAAAGCGTTGGAAGAGGCCAGCTCCAAGCGTGCT
GCGCTGGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAA
AAAGACCATATTCCTCCAATCTCCGATAGGATATTCAATCACGAGATCTCGATCCCCAGG
TGACACCTTTTCCTTGGACGTGTTGACAGCTCTTCTGATTCTGTATTCGGGTGGAACGCC
GACGTCCTTAGAAGAGTGTTGAATAGTTGAACTGAAGACGGTGATCATCAAGTACGCCAT
GTCCAGCGTTGGGATAGAAGATAACCCCCTATGTGGTCGTTCTGTCAAAGATGTCAAGCC
ATTGTCATGAACAGTATCATATTGTACAGAATAATTTAGGTAATAATAGAACAGACAGAA
ACCAACGATTTTACTCACTGGAGATGTAAATATTTCCCTTGTTAATCTGTGACCAAAAGC
AGTTGTTCCTAACTAAAAACTCATGCTGGCAAATCTTACTATGAGAGAAATTGAGTTGTC
TGCAGTC