Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0438400-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:14453237:14456471:1 gene:Os12g0438400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os12t0438400-01);Conserved hypothetical protein. (Os12t0438400-02)
Sequence

ATGAGGCTGATTGGGAGAGGAAAGAGTTCCAAGGCCAAGAAGGGCTCTTCAACTCCATTG
CAATCCAAGGAGAAGATTGCTGCAAATGTGGAGACTGTTGCTGTTGGTTCCAACAACAGG
CAAGTGGCACCTGATGATAACATGCCCCTGGGAGAAGCTGGCTATGCTAGCAGCAGAGAT
GAGGTTTTCTTTGAAGCTTGCCCTTGGTTAGAGTCTGACTGCGAGGATGAATTCTACAGT
ATCAATGGAGATGGCACCCCTGCAAGATCATTCAGAACGAACTCCAGCAACCATGCGATA
CAACCTGAACCTCGCAAGCTGCCCACACTGGGTGCCATCCTGAAGGCCGAGCCGCTGAGG
CCGCCACCACCACCGCAGGAGACGCAGCCAACGCCGCCGTCGCCGGCGACGACAATGCGA
CTCGCCGACCTCCTCCGGGAGAGGCAAGAATCGTTCACCTGCTACGACGGCCCTGCCTGC
GCCATCTCCCGGACGGGCTCCTCCTGCGGCGCCGGCAACGGCGAGCAGTGGAGCCATTGC
TGCATTCCGAGCTTCGTCCCGCGTACCAGTGTGAGCTACGCGAAGGGGAGGAGGAAGCGC
AGGTGA

Peptide Sequence

PEP ID

Os12t0438400-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:14453237:14456471:1 gene:Os12g0438400 transcript:Os12t0438400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os12t0438400-01);Conserved hypothetical protein. (Os12t0438400-02)
Sequence

MRLIGRGKSSKAKKGSSTPLQSKEKIAANVETVAVGSNNRQVAPDDNMPLGEAGYASSRD
EVFFEACPWLESDCEDEFYSINGDGTPARSFRTNSSNHAIQPEPRKLPTLGAILKAEPLR
PPPPPQETQPTPPSPATTMRLADLLRERQESFTCYDGPACAISRTGSSCGAGNGEQWSHC
CIPSFVPRTSVSYAKGRRKRR

Transcript Sequence

Transcript ID

Os12t0438400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:14453237:14456471:1 gene:Os12g0438400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os12t0438400-01);Conserved hypothetical protein. (Os12t0438400-02)
Sequence

TCCAAGCTGCCACTCAAAATGAGACCAATTATCTGAATTTGCATCTCTCTCTCTCTCCCT
TGATTTTACACAATTCCCCAAGTCAAGATCCGTCTCTTCTGCTGCTTTGCTTTATATACA
CCCCATTAGTCCACTCCACCACCCCATAGTATATTCTCTCCTCACTTAAACTAATCATCT
CTCTCTCTCTCTCCCCCTCCAAATTGTCAATCTCATTTCTGAACTCATGTTCAGGTTTGA
CCTTGCAAAATAGCAGTAGCTACTATTCATCCAGGAATAGGAGTTGCAGGGGAGGCATGA
GGCTGATTGGGAGAGGAAAGAGTTCCAAGGCCAAGAAGGGCTCTTCAACTCCATTGCAAT
CCAAGGAGAAGATTGCTGCAAATGTGGAGACTGTTGCTGTTGGTTCCAACAACAGGCAAG
TGGCACCTGATGATAACATGCCCCTGGGAGAAGCTGGCTATGCTAGCAGCAGAGATGAGG
TTTTCTTTGAAGCTTGCCCTTGGTTAGAGTCTGACTGCGAGGATGAATTCTACAGTATCA
ATGGAGATGGCACCCCTGCAAGATCATTCAGAACGAACTCCAGCAACCATGCGATACAAC
CTGAACCTCGCAAGCTGCCCACACTGGGTGCCATCCTGAAGGCCGAGCCGCTGAGGCCGC
CACCACCACCGCAGGAGACGCAGCCAACGCCGCCGTCGCCGGCGACGACAATGCGACTCG
CCGACCTCCTCCGGGAGAGGCAAGAATCGTTCACCTGCTACGACGGCCCTGCCTGCGCCA
TCTCCCGGACGGGCTCCTCCTGCGGCGCCGGCAACGGCGAGCAGTGGAGCCATTGCTGCA
TTCCGAGCTTCGTCCCGCGTACCAGTGTGAGCTACGCGAAGGGGAGGAGGAAGCGCAGGT
GAAGAAGCGATCGATCGAGAGAGTGTGCAAAGAAATCAAGTGGTTTTTGGGATGATAATT
GTTCAGAATGTGCAGTGTCTCAGAGAGAGTCCACCTGCTTGTGTATTGTAACAACAACTA
CAGTACAACGACGTTAATTAGCCGCCCAAATCAAATGTATATATGTGATGTGACAGTGAG
ATACCTACCAAAATACTCCAAATAGGAAAGACCACCTCTTGGGTGCGATGTCAGGC