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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0438000-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:14423865:14424890:-1 gene:Os12g0438000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Histone H2A. (Os12t0438000-02)
Sequence

ATGGCGGGACGCGGGAAGGCGATCGGCGCCGGGGCCGCGAAGAAGGCGACGTCGAGGAGC
TCCAAGGCCGGGCTGCAGTTCCCCGTCGGGAGGATCGCCAGGTTCCTCAAGGCCGGCAAG
TACGCCGAGCGCGTCGGCGCCGGCGCTCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTC
GCCGCCGAGGTGCTGGAGCTCGCCGGGAACGCGGCGAGGGACAACAAGAAGACCCGCATT
GTGCCGCGCCACATCCAGCTCGCGGTGCGCAACGACGAGGAGCTCACCAAGCTGCTCGGC
GGCGCCACCATCGCCAGCGGCGGCGTCATGCCCAACATCCACCAGCACCTCCTCCCCAAG
AAGGCCGGGTCATCCAAGGCGTCCCACGCCGACGACGACGACAACTGA

Peptide Sequence

PEP ID

Os12t0438000-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:14423865:14424890:-1 gene:Os12g0438000 transcript:Os12t0438000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Histone H2A. (Os12t0438000-02)
Sequence

MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPK
KAGSSKASHADDDDN

Transcript Sequence

Transcript ID

Os12t0438000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:14423865:14424890:-1 gene:Os12g0438000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Histone H2A. (Os12t0438000-02)
Sequence

ATCGTCTCATCCGCCGCCTCCCCTCGCCTCGCCGCGCGCTTCCTCCGCCTCCGCCGCCGC
GTCGATCTCGCTCGCGCAGCCGGTTTCTTCTCTCGTCGGTGGGTGGGGTATAGGATGGCG
GGACGCGGGAAGGCGATCGGCGCCGGGGCCGCGAAGAAGGCGACGTCGAGGAGCTCCAAG
GCCGGGCTGCAGTTCCCCGTCGGGAGGATCGCCAGGTTCCTCAAGGCCGGCAAGTACGCC
GAGCGCGTCGGCGCCGGCGCTCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCC
GAGGTGCTGGAGCTCGCCGGGAACGCGGCGAGGGACAACAAGAAGACCCGCATTGTGCCG
CGCCACATCCAGCTCGCGGTGCGCAACGACGAGGAGCTCACCAAGCTGCTCGGCGGCGCC
ACCATCGCCAGCGGCGGCGTCATGCCCAACATCCACCAGCACCTCCTCCCCAAGAAGGCC
GGGTCATCCAAGGCGTCCCACGCCGACGACGACGACAACTGAGCCCCCTTCCTCCTCCTC
CGCCGCCGCCGCCGCCTGCATTCGTCATCTTGTCTTATGCACTAGTAGGATATTTAGCTG
TTTATTTTGGACCAAGGTGTGTTGTTGCGTTAAGCAGTAGGAAGAAACAAGAAAAAAATT
GCTTAGTTCTTGGTTTGTTTTGGTGGCCTGATTGATGGCTGTGAATATGGTGAAATTTTT
GGCTATTTATCTCAGATGTAATCCCGGCGATGATCTTGCTGTGTTTGGCACTTGAGTGGT
TGAAGAAACGAGGAACAGACTGAAACTAAAACTTTGAATCGTC